Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 1.4e-245 852.4 408 100.0
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 1.1e-197 693.3 401 81.3
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 8.6e-195 683.7 407 80.6
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 8.0e-193 677.2 401 79.8
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 7.5e-191 670.6 401 79.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-189 666.4 401 79.1
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.2e-188 663.3 401 78.6
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 5.4e-181 637.9 384 78.9
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 5.2e-176 621.3 400 73.8
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 1.5e-175 619.8 401 72.1
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 7.5e-175 617.5 401 71.6
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 9.9e-175 617.1 398 71.9
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.7e-174 616.3 398 72.4
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.2e-174 615.9 400 72.2
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 6.4e-174 614.4 398 71.6
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.4e-173 612.5 397 71.3
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.1e-173 610.9 398 71.4
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 7.1e-173 610.9 401 70.8
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.2e-172 610.1 398 72.1
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.2e-172 610.1 398 71.4
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 3.5e-172 608.6 400 72.0
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 7.8e-172 607.4 400 69.8
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.3e-171 606.7 396 72.5
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 4.3e-170 601.7 408 69.9
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 7.3e-170 600.9 398 71.4
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 7.3e-170 600.9 398 71.4
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 2.8e-169 599.0 398 69.8
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.7e-169 598.2 400 70.2
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.0e-168 595.1 399 69.9
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.2e-167 593.6 398 71.6
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 2.2e-166 589.3 400 70.0
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 1.2e-164 583.6 396 69.2
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-164 583.6 395 70.9
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.7e-163 577.4 398 69.6
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 8.7e-163 577.4 402 67.9
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 5.6e-162 574.7 401 67.8
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 5.6e-162 574.7 401 67.8
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.2e-161 573.5 401 67.6
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 1.6e-161 573.2 401 67.6
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 1.6e-161 573.2 401 67.6
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.6e-161 573.2 408 65.4
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 2.1e-161 572.8 395 67.8
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.8e-161 572.4 399 67.7
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.8e-160 569.7 405 66.9
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.8e-160 569.7 402 68.4
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.1e-160 568.9 400 67.2
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 5.3e-160 568.2 394 67.8
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 9.0e-160 567.4 402 66.2
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 9.0e-160 567.4 402 67.7
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.0e-159 566.2 402 66.9
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 3.4e-159 565.5 401 66.6
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 5.8e-159 564.7 394 67.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 7.6e-159 564.3 409 66.7
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 9.9e-159 563.9 401 68.1
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.3e-158 563.5 394 66.5
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.4e-157 559.3 394 67.3
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 7.1e-157 557.8 402 66.7
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.2e-156 557.0 400 65.8
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.1e-154 550.4 393 66.7
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.5e-154 550.1 403 64.0
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.3e-153 547.0 388 66.0
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.8e-153 545.8 388 66.5
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 3.6e-153 545.4 393 64.1
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 3.6e-153 545.4 403 63.8
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 4.8e-153 545.0 393 65.4
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 8.1e-153 544.3 400 64.0
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 9.0e-152 540.8 392 63.3
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 9.0e-152 540.8 392 63.3
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 9.0e-152 540.8 388 64.9
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.5e-151 538.5 410 62.0
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 5.8e-151 538.1 388 63.7
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 7.6e-151 537.7 399 62.2
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 1.7e-150 536.6 400 63.5
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.9e-150 535.0 400 63.8
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 4.2e-149 531.9 396 63.4
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.6e-148 530.0 400 61.8
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.6e-148 530.0 393 63.1
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.1e-148 529.6 410 62.2
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.6e-148 528.5 393 62.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.8e-147 526.6 387 64.1
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 5.1e-147 525.0 400 63.2
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 8.7e-147 524.2 401 59.9
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 1.9e-146 523.1 395 61.3
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.5e-146 522.7 404 63.6
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.3e-145 520.4 386 63.2
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 6.2e-145 518.1 383 63.7
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 6.2e-145 518.1 395 60.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.8e-144 516.5 395 59.7
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.2e-143 513.8 383 62.4
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.2e-143 513.8 383 62.4
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.2e-143 513.8 399 60.7
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 2.6e-143 512.7 388 61.3
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 7.6e-143 511.1 392 61.2
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.7e-142 510.0 397 61.5
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 2.2e-142 509.6 387 61.2
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 2.9e-142 509.2 408 59.3
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 3.8e-142 508.8 394 60.9
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.1e-141 507.3 384 61.7
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 9.3e-141 504.2 394 60.9
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.6e-140 503.4 372 63.7
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.6e-140 503.4 372 63.7
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 1.6e-140 503.4 407 60.0
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.6e-140 503.4 384 61.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 6.0e-140 501.5 401 60.1
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.3e-139 500.4 394 58.6
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 3.9e-139 498.8 396 60.1
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.5e-138 496.9 392 60.5
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.5e-138 496.9 393 59.3
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 4.3e-138 495.4 403 58.1
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 1.3e-137 493.8 409 57.0
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.8e-137 492.7 393 58.5
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.8e-136 490.0 395 58.5
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 3.4e-135 485.7 384 58.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.7e-134 483.4 409 57.0
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.9e-134 482.6 394 58.1
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 4.2e-133 478.8 386 58.3
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 3.6e-124 449.1 389 54.5
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 6.1e-124 448.4 391 55.5
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.8e-121 439.5 410 54.6
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.9e-118 429.5 399 52.4
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.5e-118 428.3 402 53.2
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 9.4e-117 424.5 401 53.9
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 8.2e-113 411.4 398 52.8
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 7.7e-111 404.8 406 50.2
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 2.1e-108 396.7 400 50.8
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 6.1e-108 395.2 406 49.5
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.7e-105 386.0 375 52.3
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 7.7e-103 378.3 391 50.1
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 2.5e-101 373.2 399 48.1
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 7.5e-98 361.7 403 47.1
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 1.3e-94 350.9 406 47.3
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 6.5e-94 348.6 397 49.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 4.0e-91 339.3 405 43.7
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 7.5e-90 335.1 379 47.5
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.5e-85 320.1 298 54.0
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.5e-82 308.5 228 67.5
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 6.3e-81 305.4 251 56.2
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.8e-76 290.0 400 42.5
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.4e-74 282.7 393 41.7
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.4e-72 277.7 393 42.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 3.2e-72 276.6 391 39.1
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.7e-71 273.5 395 43.0
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 1.9e-61 240.7 186 59.7
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 9.9e-58 228.4 156 65.4
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 8.1e-52 208.8 423 32.4
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 2.6e-42 177.2 154 53.9
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.8e-35 154.5 394 27.7
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.0e-30 137.1 115 58.3
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 5.6e-29 132.9 89 69.7
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 4.8e-28 129.8 319 28.5
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 1.4e-27 128.3 79 72.2
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 4.8e-20 103.2 404 26.0
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.4e-11 75.1 40 85.0
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 2.5e-08 64.3 405 22.0
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 3.2e-08 63.9 49 59.2
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 2.3e-06 57.8 58 44.8
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 3.9e-06 57.0 47 53.2


User provided reference genes

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