Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 7.0e-266 920.6 685 100.0
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 2.0e-212 743.0 679 84.8
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 8.4e-211 737.6 679 84.5
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 9.3e-210 734.2 678 86.3
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 8.1e-206 721.1 679 83.4
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.9e-202 709.9 679 83.9
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 1.6e-201 706.8 467 78.6
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.1e-199 700.7 678 81.6
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.5e-199 700.3 678 81.4
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 5.6e-199 698.4 680 82.1
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.3e-198 697.2 678 81.9
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.1e-198 696.4 693 80.2
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.8e-198 696.0 694 80.1
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 8.2e-198 694.5 679 81.7
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 8.2e-198 694.5 678 82.0
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 1.1e-197 694.1 685 81.5
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.8e-197 693.3 681 82.1
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 1.8e-197 693.3 679 80.9
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 2.0e-196 689.9 682 82.0
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 5.8e-196 688.3 678 80.8
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 7.6e-196 688.0 679 81.0
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 1.0e-195 687.6 678 81.0
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 3.8e-195 685.6 678 81.3
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 1.9e-194 683.3 679 80.3
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 2.5e-194 682.9 678 80.7
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 3.2e-194 682.6 678 79.9
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.6e-193 680.2 679 81.3
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.6e-193 680.2 678 80.7
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.3e-192 677.2 678 80.8
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 1.8e-192 676.8 679 80.6
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 2.3e-192 676.4 680 81.0
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.9e-192 675.6 678 80.1
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 6.7e-192 674.9 685 80.3
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.1e-191 674.1 466 75.3
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 1.9e-191 673.3 678 80.8
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 1.9e-191 673.3 678 80.8
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 7.4e-191 671.4 680 81.2
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 7.4e-191 671.4 677 79.9
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 2.2e-190 669.8 677 79.5
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 6.3e-190 668.3 674 79.7
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 1.4e-189 667.2 678 79.6
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 3.1e-189 666.0 679 79.7
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 4.5e-188 662.1 678 79.2
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 4.5e-188 662.1 466 73.4
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 5.0e-187 658.7 678 81.0
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 8.5e-187 657.9 678 78.8
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 1.9e-186 656.8 678 79.8
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 2.5e-186 656.4 466 72.3
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 7.2e-186 654.8 678 78.9
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 3.9e-184 649.0 466 74.0
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 3.9e-184 649.0 680 78.2
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 3.9e-184 649.0 678 78.9
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 6.7e-184 648.3 678 79.1
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 9.7e-183 644.4 652 77.1
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 6.3e-182 641.7 677 77.7
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 1.1e-181 641.0 685 78.0
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 9.1e-181 637.9 465 74.4
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 7.7e-180 634.8 680 78.8
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 1.0e-179 634.4 466 74.0
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 3.8e-179 632.5 678 78.8
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.4e-178 630.6 680 78.4
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.9e-178 630.2 679 78.2
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.1e-177 626.7 677 77.0
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.1e-175 620.9 689 77.1
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 5.7e-175 618.6 476 69.1
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 2.4e-173 613.2 714 73.7
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.0e-171 607.8 677 75.5
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 2.9e-171 606.3 677 75.9
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 8.5e-171 604.7 677 75.8
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 4.2e-170 602.4 677 75.5
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 1.2e-169 600.9 679 76.0
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.1e-167 594.3 677 75.0
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.1e-167 594.3 677 75.0
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 2.0e-167 593.6 679 73.9
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 7.4e-167 591.7 625 79.5
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 2.8e-166 589.7 678 74.3
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 4.1e-165 585.9 678 73.9
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 7.0e-165 585.1 678 73.7
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 7.0e-165 585.1 571 86.2
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 1.1e-162 577.8 678 72.9
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.5e-162 577.4 678 74.2
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 5.5e-162 575.5 680 62.8
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 3.6e-161 572.8 677 73.3
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 4.7e-161 572.4 677 74.3
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 8.8e-160 568.2 677 73.4
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 2.6e-159 566.6 678 74.2
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.3e-159 566.2 611 75.3
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 1.7e-158 563.9 678 73.3
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.8e-158 563.1 465 65.4
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 3.7e-158 562.8 678 73.5
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 1.1e-157 561.2 603 63.7
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 1.3e-155 554.3 677 73.1
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.2e-155 553.5 570 84.4
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.8e-155 552.7 678 71.2
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.9e-154 550.4 679 72.3
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 2.5e-154 550.1 462 63.4
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 5.5e-154 548.9 678 72.1
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.1e-153 547.0 734 64.6
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.4e-152 544.3 466 61.2
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 2.3e-152 543.5 596 53.5
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 1.8e-149 533.9 399 71.4
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 4.7e-145 519.2 462 60.2
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 2.3e-144 516.9 448 64.5
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 5.9e-140 502.3 571 78.5
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 1.5e-130 471.1 678 67.8
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 5.4e-125 452.6 356 68.8
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.6e-124 451.1 714 64.1
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 1.0e-123 448.4 323 74.3
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 1.5e-122 444.5 688 64.4
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 9.5e-122 441.8 631 58.8
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 4.4e-119 433.0 475 52.0
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 2.6e-111 407.1 279 75.3
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.2e-109 400.2 293 74.7
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 5.6e-106 389.4 402 52.7
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.6e-87 327.4 679 58.9
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.5e-66 258.5 194 69.1
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 3.1e-64 250.8 231 61.5
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 7.2e-61 239.6 471 33.3
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.6e-60 238.4 143 81.8
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 7.4e-58 229.6 279 53.0
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 6.3e-57 226.5 577 48.4
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 4.2e-53 213.8 144 75.0
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 1.2e-52 212.2 488 30.1
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.1e-52 209.9 174 60.9
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 8.0e-52 209.5 297 49.2
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 1.8e-51 208.4 199 51.3
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 7.0e-48 196.4 143 69.2
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 3.5e-47 194.1 537 27.7
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.5e-45 188.7 171 60.2
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 9.1e-40 169.5 130 63.1
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 2.7e-39 167.9 291 40.5
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 1.2e-36 159.1 147 52.4
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 8.0e-36 156.4 116 71.6
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.3e-35 154.8 142 59.9
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 2.8e-33 147.9 292 90.4
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 7.0e-24 116.7 290 36.9
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.0e-23 115.2 66 83.3
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 2.8e-20 104.8 526 22.6
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 6.2e-20 103.6 118 50.0
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.7e-17 95.5 92 58.7
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.7e-17 94.4 76 60.5
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.9e-17 94.0 75 62.7
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 5.4e-16 90.5 508 23.2
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 7.3e-13 80.1 52 76.9
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.8e-12 78.2 52 75.0
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 4.4e-10 70.9 185 29.2
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 2.9e-09 68.2 52 71.2
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 5.4e-08 63.9 37 81.1
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.2e-07 62.8 53 66.0
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 7.8e-07 60.1 137 34.3


User provided reference genes

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