Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 3.0e-309 1064.3 524 100.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 6.1e-294 1013.4 527 94.3
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.0e-292 1008.4 523 93.7
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 6.5e-288 993.4 566 87.8
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 2.7e-286 988.0 521 92.3
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 9.7e-284 979.5 524 91.0
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 3.7e-283 977.6 524 91.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 6.3e-283 976.9 522 92.0
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 8.2e-283 976.5 536 89.9
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.4e-282 975.7 531 89.3
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.4e-282 974.9 522 91.6
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.1e-282 974.5 523 91.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 3.1e-282 974.5 524 91.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 9.1e-282 973.0 522 91.4
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.2e-281 972.6 522 91.2
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.6e-281 972.2 514 92.2
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.0e-281 971.8 525 90.5
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.0e-281 971.8 525 90.5
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.0e-281 971.8 523 90.4
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.6e-281 971.5 523 90.4
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 4.5e-281 970.7 524 90.6
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 4.5e-281 970.7 523 90.6
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.0e-280 969.5 522 91.2
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.2e-280 968.4 523 90.4
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.5e-280 966.8 523 90.1
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 8.5e-280 966.5 523 90.4
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.9e-279 965.3 529 89.6
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.9e-279 965.3 535 88.8
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 3.2e-279 964.5 524 89.9
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 5.5e-279 963.8 524 89.7
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.1e-278 961.8 529 89.0
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.1e-278 961.8 524 89.9
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.7e-278 961.4 523 89.7
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 4.7e-278 960.7 536 88.2
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 6.1e-278 960.3 521 89.1
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 8.0e-278 959.9 529 88.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.0e-277 959.5 519 89.8
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.4e-277 959.1 523 89.3
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 1.8e-277 958.7 529 89.0
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 3.0e-277 958.0 523 89.1
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 5.2e-277 957.2 529 88.7
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 3.3e-276 954.5 529 88.5
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 3.3e-276 954.5 524 87.6
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.7e-275 951.0 523 88.1
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.4e-274 949.1 524 88.2
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.8e-274 948.7 524 88.4
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 5.3e-274 947.2 514 90.7
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-273 946.0 524 88.2
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.2e-273 946.0 522 87.9
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 2.7e-273 944.9 509 89.4
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 4.5e-273 944.1 528 87.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 5.9e-273 943.7 505 89.9
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.0e-272 943.0 523 87.8
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 2.9e-272 941.4 535 85.2
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.8e-272 941.0 523 88.5
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 5.0e-272 940.6 525 87.2
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 6.5e-272 940.3 524 86.8
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 8.5e-272 939.9 522 88.3
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-271 939.5 522 87.5
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.1e-271 939.5 524 87.6
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.5e-271 939.1 522 87.0
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.5e-271 939.1 523 87.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.9e-271 938.7 500 91.2
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 3.2e-271 937.9 511 88.5
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.6e-270 935.6 523 85.7
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.1e-270 935.3 521 88.1
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.7e-270 934.9 522 86.2
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 3.6e-270 934.5 559 83.4
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 8.0e-270 933.3 521 86.4
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 8.0e-270 933.3 524 87.2
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 8.0e-270 933.3 524 87.2
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 8.0e-270 933.3 523 86.2
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 8.0e-270 933.3 523 86.2
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.8e-269 932.2 526 87.5
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 2.3e-269 931.8 500 90.2
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 4.0e-269 931.0 523 85.9
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 5.2e-269 930.6 500 90.4
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 6.8e-269 930.2 522 86.4
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 6.8e-269 930.2 522 86.4
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.5e-268 929.1 516 86.8
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 2.6e-268 928.3 522 86.4
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 2.6e-268 928.3 527 85.8
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.4e-268 927.9 508 88.4
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 7.5e-268 926.8 532 85.5
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 9.8e-268 926.4 546 83.2
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 2.2e-267 925.2 522 86.0
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 2.2e-267 925.2 522 86.0
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 2.2e-267 925.2 513 87.7
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 2.4e-266 921.8 523 84.7
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 7.0e-266 920.2 521 86.2
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 9.1e-266 919.8 530 84.7
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-265 919.5 523 84.9
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.2e-265 919.5 525 85.5
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.9e-264 914.8 525 84.8
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.5e-263 911.8 523 83.7
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 5.2e-261 904.0 499 87.8
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 2.6e-260 901.7 510 85.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 5.7e-260 900.6 499 85.8
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 9.8e-260 899.8 523 82.8
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 9.8e-260 899.8 508 84.1
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.3e-259 899.4 518 81.9
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 4.3e-255 884.4 498 82.9
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 7.3e-255 883.6 524 82.1
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 7.3e-255 883.6 524 82.1
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.0e-252 875.5 526 78.9
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.4e-250 868.6 500 83.4
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.2e-246 856.3 517 81.4
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.4e-245 852.8 563 76.0
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.1e-245 851.7 526 77.4
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 3.1e-237 825.1 524 75.4
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 4.9e-235 817.8 525 75.2
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.5e-233 811.6 473 85.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.0e-232 808.5 506 74.7
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.5e-231 805.4 499 76.2
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.4e-226 789.6 526 70.9
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.1e-226 788.1 500 73.6
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 6.0e-225 784.3 500 73.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.1e-221 773.5 526 69.2
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 3.8e-219 765.0 522 75.1
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 8.4e-219 763.8 520 71.2
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 5.4e-218 761.1 522 73.9
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.6e-214 749.6 523 74.4
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 8.1e-214 747.3 412 87.4
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.8e-208 729.6 522 73.0
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.5e-204 716.5 503 66.2
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.4e-202 709.1 379 92.1
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 4.3e-191 671.8 511 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.8e-190 669.1 499 65.3
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 6.9e-189 664.5 419 81.4
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.7e-187 659.8 346 94.5
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 4.3e-183 645.2 344 92.2
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.1e-162 577.4 523 59.1
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.8e-157 560.1 355 78.6
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 6.5e-155 551.6 491 54.0
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.5e-151 540.4 292 88.0
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.1e-146 524.2 291 85.6
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 3.6e-145 519.2 275 93.5
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.2e-140 504.2 356 73.3
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 5.7e-135 485.3 510 49.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 9.5e-130 468.0 502 49.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 9.2e-125 451.4 285 80.4
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 1.4e-96 357.8 196 85.7
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.3e-83 313.9 409 41.1
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.2e-65 254.2 325 46.8
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 6.3e-65 252.7 410 41.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 3.5e-47 193.7 118 78.0
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 5.7e-42 176.4 93 89.2
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.4e-32 145.2 79 84.8
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.2e-28 132.1 91 68.1
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 4.9e-25 120.2 68 79.4
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.3e-19 101.3 78 64.1
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 1.4e-16 92.0 72 65.3
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.1e-13 82.4 125 43.2
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 4.0e-11 73.9 48 64.6
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.9e-08 65.1 35 80.0


User provided reference genes

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