Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 4.0e-299 1030.8 565 100.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 3.5e-223 778.5 567 77.4
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.5e-221 773.1 570 76.8
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 3.3e-189 665.6 567 68.1
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 7.0e-187 657.9 488 74.8
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 1.2e-175 620.5 566 63.4
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 5.2e-174 615.1 572 62.9
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.4e-171 606.3 536 63.8
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 7.0e-171 604.7 570 61.6
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 4.3e-168 595.5 561 59.4
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.3e-166 589.7 572 61.0
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 5.2e-166 588.6 572 61.4
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 8.9e-166 587.8 564 61.5
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 8.9e-166 587.8 572 61.4
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.5e-165 587.0 577 60.1
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 1.5e-165 587.0 550 60.2
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 3.4e-165 585.9 581 60.2
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 7.5e-165 584.7 572 61.2
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.8e-163 580.1 570 58.8
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.2e-163 579.3 560 58.2
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 4.1e-163 578.9 535 61.9
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.7e-162 576.2 585 57.1
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.9e-160 570.1 574 59.6
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.1e-158 562.8 534 59.4
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.2e-157 560.8 563 60.4
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.8e-157 558.5 542 59.8
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.7e-156 557.0 561 57.4
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 8.3e-156 554.7 562 58.2
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.3e-156 554.7 533 59.7
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.4e-155 553.9 561 57.8
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.9e-155 553.5 532 60.0
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.9e-155 553.5 564 56.4
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.1e-155 552.4 532 59.8
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 7.3e-152 541.6 560 58.6
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 3.6e-151 539.3 576 57.1
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.3e-150 536.6 566 55.8
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 3.1e-150 536.2 576 55.7
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 5.2e-150 535.4 566 55.8
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.2e-149 534.3 566 54.1
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 3.4e-149 532.7 564 57.3
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.3e-148 530.8 575 56.0
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 2.9e-148 529.6 539 58.4
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 3.7e-148 529.3 624 52.9
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 4.1e-147 525.8 565 56.5
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.2e-146 524.2 560 55.5
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.7e-146 523.1 532 53.6
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 6.0e-146 521.9 567 57.3
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.0e-145 519.6 578 51.9
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.9e-145 519.2 568 52.5
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.1e-144 517.7 572 57.9
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 8.1e-143 511.5 560 57.0
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.1e-142 511.1 560 56.6
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.1e-142 511.1 571 57.8
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.3e-137 494.2 534 52.1
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.1e-136 491.1 571 56.0
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 9.0e-134 481.5 494 54.0
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.4e-133 479.2 451 57.2
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 1.4e-131 474.2 568 54.9
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.7e-129 467.2 529 49.5
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 4.3e-128 462.6 589 49.4
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 7.3e-128 461.8 565 52.2
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.0e-126 456.1 557 49.6
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 5.3e-126 455.7 552 48.9
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 6.9e-126 455.3 551 48.8
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 1.2e-125 454.5 547 49.4
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.4e-125 453.0 599 46.2
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 5.8e-125 452.2 539 48.2
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 7.6e-125 451.8 551 48.3
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.3e-124 451.1 547 48.1
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.7e-124 450.7 557 46.9
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.7e-124 450.7 574 50.2
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 1.7e-124 450.7 593 47.9
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 4.9e-124 449.1 562 50.5
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 8.4e-124 448.4 547 50.3
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.9e-123 447.2 582 49.1
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.9e-123 447.2 605 46.9
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 4.2e-123 446.0 540 48.0
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 5.4e-123 445.7 541 48.6
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 5.4e-123 445.7 540 47.8
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 5.4e-123 445.7 541 48.6
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 5.4e-123 445.7 581 48.9
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 7.1e-123 445.3 593 47.7
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 9.3e-123 444.9 561 51.0
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.2e-122 444.5 521 54.5
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 1.2e-122 444.5 592 47.5
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.6e-122 444.1 575 51.0
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 2.3e-121 440.3 564 51.8
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.5e-120 436.8 601 46.1
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 4.8e-119 432.6 587 48.4
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.4e-118 431.0 554 48.7
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.3e-118 429.1 553 44.7
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.5e-117 427.6 557 48.8
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 6.4e-116 422.2 573 46.8
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.1e-112 411.4 571 48.0
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 4.8e-111 406.0 379 62.5
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 6.2e-111 405.6 561 43.9
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.4e-110 404.4 578 44.6
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 7.6e-109 398.7 581 43.0
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.9e-108 396.7 602 45.7
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 3.8e-108 396.4 311 63.3
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.5e-107 393.7 578 45.7
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 2.8e-103 380.2 578 41.5
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.4e-99 367.9 560 46.6
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 9.3e-99 365.2 565 43.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 4.3e-96 356.3 542 41.3
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 7.4e-96 355.5 604 40.6
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 2.2e-95 354.0 550 41.6
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 1.2e-93 348.2 472 45.6
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 2.0e-93 347.4 565 42.8
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 4.5e-93 346.3 496 41.7
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 5.9e-93 345.9 564 43.6
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 8.5e-92 342.0 726 37.7
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.6e-90 337.8 659 36.6
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 7.4e-88 328.9 518 41.7
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 7.4e-80 302.4 447 43.2
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.6e-72 277.3 551 35.0
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 9.1e-70 268.9 570 33.7
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 5.0e-68 263.1 628 32.6
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 5.2e-65 253.1 491 39.7
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.4e-62 245.0 273 47.3
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 3.1e-62 243.8 206 55.8
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.7e-61 240.7 667 29.1
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.3e-59 233.8 277 41.9
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 8.0e-58 229.2 702 28.5
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.8e-57 228.0 429 44.3
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 5.7e-56 223.0 520 34.8
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.4e-48 196.8 168 58.3
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 4.4e-40 170.2 299 34.8
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 2.2e-39 167.9 164 62.8
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 2.2e-39 167.9 186 56.5
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 7.8e-37 159.5 477 27.3
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 9.5e-35 152.5 282 34.0
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.2e-34 152.1 562 29.0
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 4.0e-33 147.1 141 51.1
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 1.3e-28 132.1 130 55.4
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 5.1e-28 130.2 262 30.5
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 2.4e-22 111.3 81 65.4
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.4e-22 111.3 81 65.4
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.2e-18 99.0 164 34.1
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.6e-13 82.0 123 44.7
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 3.4e-08 64.3 79 41.8
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 9.3e-06 56.2 110 30.0


User provided reference genes

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