Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 3790.3 1977 100.0
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 2880.9 1955 77.3
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 2819.6 1994 75.2
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 2744.5 2001 72.7
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 2379.0 1958 64.6
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 2292.3 1958 62.0
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 2290.8 1959 62.8
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 2276.9 1960 61.8
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 2259.2 1986 60.5
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 2251.9 1959 61.2
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 2246.5 1963 61.3
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 2245.3 1957 60.4
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 2239.5 1959 61.0
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 2214.9 1960 60.7
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2210.3 1961 60.5
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 2171.7 1985 57.7
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 2164.8 1985 57.6
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 2163.3 2023 58.1
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 2162.1 2089 57.9
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 2137.1 1962 57.4
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2131.3 1960 58.9
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 2120.5 1947 57.6
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 2112.0 1979 57.9
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 2093.2 1991 56.4
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 2065.0 2058 56.1
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 2060.4 1956 55.7
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 2058.9 1954 55.7
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 2049.2 1962 56.2
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 2042.7 1977 56.6
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 2039.6 1955 56.7
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 2038.8 1969 55.9
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 2038.5 1978 57.0
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 2029.2 1970 55.8
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 2028.4 1972 55.9
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 2025.8 1959 55.8
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 2020.7 1972 55.7
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 2009.6 1987 55.9
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 2008.8 1978 55.5
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1992.2 1987 55.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1984.9 1960 55.2
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1984.5 1952 54.6
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1982.2 1987 55.1
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 1919.1 1970 52.9
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1919.1 1963 52.9
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 1901.7 1959 52.9
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 1894.0 1959 54.3
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1879.0 1975 51.6
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 1871.7 1973 51.6
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 1867.4 1957 52.5
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1854.3 2029 51.2
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 1844.7 1975 51.8
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1839.7 1961 51.5
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1837.4 1962 51.4
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 1829.3 1970 51.5
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1825.1 1964 50.8
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1819.3 1961 51.6
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1812.7 1963 50.4
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 1808.5 1960 50.7
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1790.8 1973 51.0
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1788.1 1960 50.7
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 1788.1 1947 49.9
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 1781.5 1947 49.9
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1773.1 2029 49.1
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 1770.7 1965 50.6
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1757.3 2023 49.2
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1742.2 2028 49.0
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1740.7 2029 48.0
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1738.4 2018 49.5
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1738.0 2021 48.8
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1733.4 2028 48.1
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1722.6 1971 50.6
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 1722.2 1946 49.6
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1707.6 2030 48.4
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1706.0 2036 47.4
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1701.4 2029 48.0
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 0.0e+00 1670.2 1368 64.4
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1622.4 1964 47.7
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1620.9 1605 55.5
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1598.2 1974 46.7
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1552.0 2105 44.4
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1544.6 2042 44.5
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1504.2 1995 45.6
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1494.9 1645 52.8
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1444.5 1552 51.7
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1439.9 1966 43.2
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1419.4 1984 41.7
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1367.8 1484 50.5
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1341.3 1691 45.8
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 0.0e+00 1311.6 1178 57.3
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1298.5 1634 46.5
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1284.2 1637 45.6
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1281.5 1637 45.6
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1279.2 1636 45.8
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1269.6 1630 45.0
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1225.7 1225 55.1
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 1093.2 1247 48.8
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 2.0e-310 1070.1 1313 47.9
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.9e-288 996.5 1423 44.6
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 4.6e-278 962.6 1975 35.3
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 2.0e-244 850.9 830 55.5
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 7.5e-244 849.0 1159 43.2
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 4.8e-243 846.3 863 55.5
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 2.5e-231 807.4 778 57.7
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 3.0e-216 757.3 2007 29.2
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 1.6e-206 724.9 2039 28.7
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 2.0e-204 718.0 2005 28.8
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.1e-198 698.0 635 59.1
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 8.1e-190 669.5 635 55.3
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.1e-189 669.1 1012 41.4
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 2.2e-179 634.8 500 64.2
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 5.5e-178 630.2 631 52.6
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 7.9e-177 626.3 1969 27.1
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 2.3e-176 624.8 633 53.7
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 1.5e-172 612.1 564 58.9
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.1e-161 575.1 613 53.3
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.3e-159 567.8 613 52.0
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 5.9e-156 557.0 2099 25.3
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.1e-154 552.7 516 58.5
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.2e-154 551.2 618 52.3
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.8e-136 490.0 412 61.2
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 9.7e-135 486.5 643 42.5
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 6.5e-131 473.8 360 66.7
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 1.7e-123 449.1 874 36.6
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.9e-118 431.0 528 49.8
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 1.1e-117 429.9 312 68.9
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 2.1e-113 415.6 397 55.2
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.0e-113 413.7 535 47.7
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 2.9e-102 378.6 386 53.1
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.4e-101 376.3 372 51.1
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 1.5e-95 356.3 616 38.8
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.4e-95 354.8 483 46.0
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 7.3e-90 337.4 307 58.6
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 4.1e-85 321.6 316 49.7
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.7e-84 318.9 382 48.4
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.5e-82 313.2 443 44.2
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 2.8e-81 308.9 287 58.5
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.4e-77 296.6 578 35.6
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 1.6e-73 283.1 199 69.8
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 4.8e-73 281.6 363 44.9
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.9e-70 271.6 338 48.5
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 2.7e-68 265.8 310 47.7
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 3.4e-63 248.8 224 58.0
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 3.4e-63 248.8 224 58.0
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.8e-59 236.5 2240 20.9
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 6.7e-59 234.6 481 35.8
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 1.1e-48 200.7 226 48.7
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 2.2e-46 193.0 182 51.1
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 6.5e-46 191.4 182 51.6
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.4e-40 172.9 137 60.6
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.2e-39 170.6 206 46.6
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 5.5e-37 161.8 485 28.2
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 3.0e-35 156.0 235 37.9
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 6.7e-35 154.8 148 58.1
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 6.7e-27 128.3 234 32.9
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 3.1e-24 119.4 132 47.7
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 1.6e-23 117.1 347 24.5
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 1.7e-22 113.6 303 30.7
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 1.9e-21 110.2 183 38.8
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 1.4e-19 104.0 139 38.1
Ah.05g175250 Amaranthus hybridus HOM05D003586 ORTHO05D004036 1.8e-19 103.6 127 38.6
Psat0s9248g0040 Pisum sativum HOM05D000015 ORTHO05D018950 4.8e-17 95.5 101 48.5
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 3.1e-16 92.8 75 54.7
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 4.5e-15 89.0 52 69.2
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.3e-14 87.4 182 35.7
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 7.2e-13 81.6 74 62.2
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 1.8e-11 77.0 55 69.1
BolC5t34134H Brassica oleracea HOM05D003586 ORTHO05D004036 8.8e-11 74.7 88 44.3
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.7e-09 70.5 41 70.7
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 1.7e-09 70.5 41 70.7
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 1.7e-09 70.5 59 61.0
THA.LOC104803129 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 4.8e-09 68.9 54 61.1
RcHm_v2.0_Chr1g0354361 Rosa chinensis HOM05D003586 ORTHO05D004036 8.3e-09 68.2 67 56.7
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 2.4e-08 66.6 140 35.7
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 4.1e-08 65.9 215 27.9
Aa31LG5G17080 Aethionema arabicum HOM05D003586 ORTHO05D004036 3.5e-07 62.8 44 59.1
Ca_11520_v3 Cicer arietinum L. HOM05D003586 ORTHO05D009105 1.0e-06 61.2 46 63.0
BcaC05g29194 Brassica carinata HOM05D000558 ORTHO05D001857 3.8e-06 59.3 130 36.2
BolC5t34135H Brassica oleracea HOM05D003586 ORTHO05D004036 6.5e-06 58.5 163 31.3


User provided reference genes

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