Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 2214.9 1181 100.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1804.6 1213 79.1
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1686.4 1215 74.3
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1616.3 1252 71.4
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1382.9 1268 62.3
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1377.5 1237 61.4
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1324.3 1225 61.5
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 1302.3 1218 58.9
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 1269.2 1218 58.5
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1263.4 1271 59.2
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1238.8 1272 56.4
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 0.0e+00 1198.7 1279 55.9
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1173.7 1257 55.5
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1170.2 1225 55.5
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 1169.1 1224 56.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 0.0e+00 1165.6 1195 56.4
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1163.7 1269 54.5
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1161.7 1264 54.5
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 1157.5 1216 56.0
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1151.7 1271 54.5
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1145.6 1221 55.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 0.0e+00 1140.9 1247 54.4
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 0.0e+00 1139.0 1248 53.8
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 1129.8 1268 53.2
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1127.9 1239 54.2
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 0.0e+00 1126.3 1279 51.7
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1110.1 1249 53.4
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 0.0e+00 1106.7 1323 51.3
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 0.0e+00 1094.0 1261 53.1
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 0.0e+00 1092.4 1249 53.3
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 0.0e+00 1083.2 1224 54.2
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1080.5 1259 52.2
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 8.1e-312 1074.7 1258 52.8
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.0e-309 1067.0 1295 51.0
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.4e-308 1061.6 1308 50.3
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.6e-302 1043.1 1237 50.9
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 3.7e-299 1031.9 1255 51.5
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 3.0e-293 1012.3 1268 50.2
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 9.8e-292 1007.3 1149 52.7
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 7.0e-290 1001.1 1274 47.7
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 3.0e-288 995.7 1273 48.5
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 3.3e-287 992.3 1212 50.3
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 9.5e-287 990.7 1243 48.8
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 4.7e-286 988.4 1279 46.8
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.7e-283 978.8 1259 48.8
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.9e-282 976.5 1260 48.7
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 4.1e-282 975.3 1259 48.8
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.9e-279 966.5 1184 51.1
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.6e-278 963.4 1260 47.0
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 6.2e-278 961.4 1274 47.2
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 2.9e-275 952.6 1228 47.9
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.9e-274 949.9 1265 46.7
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 4.1e-274 948.7 1242 47.5
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.6e-273 946.8 1225 49.1
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 2.3e-256 889.8 1262 44.5
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 2.8e-254 882.9 1204 47.8
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 1.8e-245 853.6 1230 45.7
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.0e-240 837.8 1041 49.7
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.9e-234 817.0 1174 46.0
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 2.1e-233 813.5 850 55.6
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 9.6e-231 804.7 1298 41.8
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.6e-225 787.3 1340 42.6
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.8e-221 773.9 1271 41.6
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 3.4e-212 743.0 849 51.2
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 3.8e-211 739.6 1204 42.3
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 4.2e-210 736.1 1251 42.4
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.6e-209 734.2 1213 39.9
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 4.5e-204 716.1 913 48.6
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.2e-199 701.4 1234 39.9
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 1.7e-195 687.6 1232 38.7
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 6.5e-195 685.6 1232 39.4
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 3.2e-194 683.3 1218 40.1
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 7.2e-194 682.2 1236 38.3
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 6.8e-192 675.6 1217 40.8
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 2.0e-191 674.1 1200 38.9
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 3.7e-190 669.8 1222 38.2
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 3.2e-186 656.8 1222 37.9
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 5.5e-186 656.0 1221 38.0
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 4.7e-185 652.9 1222 37.9
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.0e-184 651.7 1279 38.5
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 8.8e-184 648.7 1228 37.5
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 7.5e-183 645.6 1263 38.2
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.0e-176 625.2 1160 38.1
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.0e-176 625.2 686 54.8
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.7e-174 617.8 1187 38.8
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 1.9e-157 561.2 1182 34.7
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 3.1e-152 543.9 667 49.6
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.4e-149 535.0 1186 35.9
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 2.1e-140 504.6 1339 34.1
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 1.1e-133 482.3 517 56.1
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 4.6e-132 476.9 1011 35.8
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 4.0e-120 437.2 537 50.7
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 2.3e-115 421.4 919 36.3
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 2.5e-106 391.3 1138 29.7
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 2.2e-86 325.1 1488 25.7
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 6.3e-81 307.0 749 33.1
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 4.4e-74 284.3 1616 25.9
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 5.0e-70 270.8 262 56.5
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 2.0e-66 258.8 347 45.8
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 7.5e-66 256.9 218 62.8
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 1.7e-65 255.8 216 71.3
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 5.6e-61 240.7 1388 27.0
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 4.4e-58 231.1 302 45.4
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.4e-48 199.5 1201 24.8
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 5.1e-46 191.0 105 82.9
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 8.9e-43 180.3 348 37.6
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.5e-42 179.5 221 46.6
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 6.6e-38 164.1 1104 21.9
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 1.1e-37 163.3 216 44.9
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 4.0e-35 154.8 256 42.2
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 4.4e-34 151.4 195 45.6
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 1.6e-28 132.9 106 58.5
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 4.2e-24 118.2 221 36.7
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 8.7e-22 110.5 111 45.9
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 2.5e-21 109.0 225 34.2
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 9.6e-21 107.1 265 30.9
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 1.6e-20 106.3 97 50.5
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 8.1e-20 104.0 186 36.6
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 1.2e-18 100.1 151 45.0
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.7e-17 96.3 237 42.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 8.4e-17 94.0 61 68.9
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 2.4e-16 92.4 84 60.7
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.7e-15 89.0 91 54.9
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.3e-13 82.0 176 35.2
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.1e-11 77.0 77 46.8
Cfa010207 Carpinus fangiana HOM05D001879 ORTHO05D007648 1.8e-11 76.3 46 84.8
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 1.8e-11 76.3 146 32.9
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.8e-11 76.3 77 45.5
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 4.0e-11 75.1 74 48.6
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 7.6e-10 70.9 51 58.8
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.2e-09 69.3 44 72.7
Psat0ss2518g0240 Pisum sativum HOM05D001879 ORTHO05D007648 2.2e-09 69.3 149 34.9
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 6.7e-06 57.8 51 49.0


User provided reference genes

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