Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 0.0e+00 1589.7 867 100.0
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 0.0e+00 1247.3 893 78.5
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 0.0e+00 1155.6 891 73.7
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 9.4e-292 1006.9 801 67.5
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 9.4e-292 1006.9 906 63.9
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.3e-288 996.5 913 63.6
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 1.4e-287 993.0 918 64.2
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 2.3e-282 975.7 904 64.5
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 1.1e-279 966.8 932 60.0
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 5.9e-278 961.1 891 61.6
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.9e-276 956.1 884 64.1
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 1.2e-275 953.4 942 60.6
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 3.0e-274 948.7 924 60.5
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 4.0e-274 948.3 913 59.5
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 5.2e-274 948.0 910 58.9
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 7.5e-273 944.1 919 60.8
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 1.7e-272 943.0 814 64.9
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 4.8e-272 941.4 839 61.6
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 1.2e-270 936.8 875 60.5
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.7e-269 932.9 923 60.1
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 2.9e-269 932.2 924 58.8
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 1.2e-267 926.8 884 61.5
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 1.8e-266 922.9 907 60.0
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 5.2e-266 921.4 892 58.4
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 6.8e-266 921.0 893 58.2
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 8.9e-266 920.6 897 57.3
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 5.7e-265 917.9 897 57.9
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 9.8e-265 917.1 890 58.5
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 1.3e-264 916.8 922 56.5
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.8e-264 915.6 893 57.2
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.1e-263 913.7 973 59.7
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 4.1e-263 911.8 909 56.8
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 2.0e-262 909.4 892 57.3
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 1.0e-261 907.1 897 60.5
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 1.0e-261 907.1 900 58.8
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 2.9e-261 905.6 897 59.2
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 2.9e-261 905.6 894 59.2
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 3.9e-261 905.2 915 56.4
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.0e-258 897.1 897 58.0
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.0e-257 892.9 897 56.3
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 7.0e-255 884.4 897 56.4
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 4.6e-254 881.7 900 57.2
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 8.6e-253 877.5 897 56.6
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 1.1e-252 877.1 821 59.6
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 5.6e-252 874.8 896 56.6
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.2e-251 873.6 811 61.0
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 6.8e-250 867.8 899 57.1
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 1.3e-248 863.6 881 56.6
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.2e-246 857.1 837 57.2
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 3.6e-243 845.5 905 58.1
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 5.2e-242 841.6 896 55.7
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 8.9e-242 840.9 935 53.0
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.3e-240 837.0 879 58.1
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 8.3e-240 834.3 845 56.8
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 1.2e-238 830.5 937 51.2
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 2.7e-238 829.3 845 56.6
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 1.4e-234 817.0 902 53.3
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 7.6e-233 811.2 943 54.4
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 1.7e-232 810.1 885 55.8
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 4.9e-232 808.5 832 54.1
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 1.4e-231 807.0 838 53.6
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 9.3e-231 804.3 832 54.6
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 2.1e-230 803.1 901 52.3
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 3.9e-229 798.9 778 57.5
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 5.1e-229 798.5 829 54.3
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 5.1e-229 798.5 896 53.3
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 6.6e-229 798.1 880 51.8
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 8.7e-229 797.7 888 52.0
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 9.6e-228 794.3 899 53.4
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 3.1e-226 789.3 798 54.8
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 5.3e-226 788.5 821 54.8
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 6.9e-226 788.1 830 55.3
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 2.2e-224 783.1 808 54.2
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 2.9e-224 782.7 808 54.1
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 1.4e-223 780.4 826 52.9
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.4e-223 780.4 830 54.1
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 1.6e-222 776.9 900 50.0
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 2.1e-222 776.5 896 53.6
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 1.5e-220 770.4 893 52.2
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 9.3e-215 751.1 677 66.3
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 2.8e-211 739.6 550 79.1
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 9.0e-210 734.6 826 51.3
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.1e-207 727.6 885 50.6
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 1.1e-207 727.6 819 52.6
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 6.1e-198 695.3 736 53.8
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 3.1e-194 682.9 802 48.6
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 1.5e-193 680.6 952 44.4
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 1.3e-187 661.0 798 47.9
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 1.1e-186 657.9 702 53.1
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 1.5e-180 637.5 648 55.7
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 9.7e-172 608.2 800 46.5
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 4.8e-171 605.9 757 48.1
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.2e-169 601.3 755 46.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.7e-161 573.5 450 67.1
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 4.4e-156 556.2 588 51.2
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.6e-153 547.7 483 61.3
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 5.0e-152 542.7 877 42.5
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 7.5e-148 528.9 917 41.5
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 2.2e-147 527.3 408 65.7
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 1.3e-144 518.1 591 52.8
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 1.2e-124 451.8 409 59.7
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 7.4e-103 379.4 688 36.5
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.1e-101 375.6 386 57.5
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 7.6e-92 342.8 482 43.4
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 4.6e-89 333.6 956 31.2
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 1.9e-87 328.2 218 78.9
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 7.2e-82 309.7 222 70.7
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 3.9e-80 303.9 841 30.8
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 2.0e-76 291.6 693 32.2
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 7.2e-74 283.1 1086 28.4
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 1.5e-55 222.2 275 46.9
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 4.1e-53 214.2 144 74.3
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 1.0e-51 209.5 249 60.2
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.9e-42 178.7 197 51.3
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 4.1e-37 161.0 140 65.7
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 3.3e-34 151.4 191 46.1
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 5.4e-21 107.5 63 74.6
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.2e-20 106.3 84 67.9
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 6.0e-20 104.0 104 58.7
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 1.3e-14 86.3 709 24.4
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 2.4e-13 82.0 131 45.0
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 3.0e-11 75.1 45 77.8
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 3.0e-11 75.1 45 77.8
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 9.5e-10 70.1 164 40.9
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 6.8e-08 63.9 54 51.9


User provided reference genes

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