Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.5e-300 1034.6 520 100.0
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 9.1e-258 893.3 520 85.4
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.5e-257 891.0 520 84.8
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 9.7e-252 873.2 523 85.1
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 4.7e-246 854.4 483 86.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.0e-245 851.7 487 85.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.4e-242 842.8 519 80.5
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 7.0e-242 840.5 484 84.7
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 6.5e-240 833.9 517 80.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.1e-239 833.2 524 80.2
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.1e-239 833.2 473 86.0
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.5e-239 832.8 521 79.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.9e-239 832.4 462 87.9
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 4.2e-239 831.2 522 79.1
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 7.2e-239 830.5 521 79.7
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.2e-238 829.7 521 79.5
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.7e-238 828.6 471 85.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.6e-238 828.2 521 79.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 6.1e-238 827.4 486 83.3
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 6.1e-238 827.4 522 78.9
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 8.0e-238 827.0 461 87.2
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.0e-237 826.6 480 85.0
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.8e-237 823.5 464 86.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.2e-236 823.2 493 81.7
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.2e-236 823.2 504 81.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.6e-236 822.0 539 77.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 5.7e-236 820.8 522 78.7
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 7.5e-236 820.5 459 87.6
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 9.8e-236 820.1 462 86.8
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.3e-235 817.4 479 84.6
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 6.3e-235 817.4 483 83.4
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 2.4e-234 815.5 522 78.4
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.1e-234 815.1 528 77.7
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 4.1e-234 814.7 525 77.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 9.1e-234 813.5 482 81.3
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.2e-233 813.1 487 81.1
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.7e-233 812.0 485 82.1
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.5e-233 811.6 473 83.9
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 4.5e-233 811.2 477 83.2
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 5.9e-233 810.8 500 79.4
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 7.7e-233 810.4 482 82.6
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-232 809.7 508 79.9
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.7e-232 809.3 461 85.5
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.3e-232 808.9 490 81.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.3e-232 808.9 480 83.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 3.8e-232 808.1 457 86.0
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.8e-232 808.1 461 85.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.6e-232 807.4 553 74.9
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.1e-231 806.6 489 81.8
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-231 805.8 480 83.1
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.3e-231 805.1 519 76.7
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.5e-231 803.5 553 75.0
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 9.5e-231 803.5 478 81.2
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.7e-230 801.2 519 76.1
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 4.7e-230 801.2 488 80.1
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 4.7e-230 801.2 493 80.3
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 6.1e-230 800.8 460 83.9
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 8.0e-230 800.4 499 78.4
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 8.0e-230 800.4 471 83.9
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.3e-229 798.9 468 82.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 5.2e-229 797.7 518 76.4
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.2e-228 796.6 460 83.3
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.2e-228 796.6 458 84.1
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.5e-228 796.2 521 77.2
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.0e-228 795.8 476 81.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.6e-228 795.4 521 77.4
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 5.7e-228 794.3 496 78.8
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 5.7e-228 794.3 516 76.6
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.2e-227 792.3 483 79.5
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.2e-227 792.3 476 81.1
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.8e-227 792.0 491 79.0
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.7e-227 791.6 460 83.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 4.9e-227 791.2 484 80.4
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.1e-226 790.0 463 82.5
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.4e-226 789.6 483 79.1
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 5.4e-226 787.7 499 78.0
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.2e-225 786.6 480 79.6
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.6e-225 786.2 490 79.2
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.7e-225 785.4 499 77.6
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.0e-224 783.5 465 82.2
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.0e-224 783.5 522 74.7
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-224 783.1 473 80.3
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.3e-224 782.3 489 78.1
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.6e-224 780.8 460 81.5
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 8.6e-224 780.4 500 76.6
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.5e-223 779.6 491 77.8
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.5e-223 779.6 491 77.8
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.9e-223 779.2 499 76.6
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.9e-223 779.2 499 76.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.9e-223 779.2 521 74.5
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.5e-223 778.9 499 76.4
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 4.3e-223 778.1 463 80.8
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 3.6e-222 775.0 491 77.4
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.2e-221 771.2 515 76.1
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 4.4e-220 768.1 498 76.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 6.4e-219 764.2 539 71.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 8.3e-219 763.8 573 68.9
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 2.4e-218 762.3 486 78.4
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.3e-216 755.7 531 72.7
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.1e-215 753.4 508 75.4
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.1e-215 753.4 493 75.9
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.2e-212 743.4 493 74.4
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 7.1e-210 734.2 458 76.9
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.3e-208 729.9 476 73.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 8.1e-206 720.7 502 69.1
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.7e-203 713.0 413 82.8
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 6.4e-203 711.1 459 76.3
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.4e-202 709.9 460 76.3
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 9.2e-202 707.2 405 84.2
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.5e-201 705.3 485 69.7
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 7.8e-201 704.1 450 79.8
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.5e-199 699.1 467 75.6
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 7.3e-199 697.6 463 72.1
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-198 696.8 494 73.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.8e-198 695.7 452 79.0
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 3.4e-196 688.7 450 78.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 6.4e-195 684.5 477 72.1
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 4.3e-191 671.8 375 86.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.0e-188 662.9 371 86.3
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 7.6e-188 661.0 470 72.8
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.9e-186 656.4 453 72.0
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.6e-185 653.3 780 48.6
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 3.0e-184 649.0 401 81.3
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 5.6e-183 644.8 453 67.3
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 4.2e-178 628.6 457 69.6
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.0e-176 622.5 464 70.0
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 4.0e-173 612.1 453 68.0
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.8e-166 589.3 357 82.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 9.3e-162 574.3 418 71.5
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.7e-121 439.9 331 69.2
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.4e-117 427.6 310 71.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 7.0e-117 425.2 238 87.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.6e-105 387.5 292 66.4
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.6e-97 359.8 256 73.0
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.4e-93 347.8 462 39.8
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 3.0e-91 340.1 489 39.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.5e-90 337.0 202 80.2
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.9e-86 322.8 452 38.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.8e-80 304.3 229 67.2
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.6e-68 263.1 399 42.6
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 7.6e-63 245.7 131 90.8
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 7.4e-58 229.2 141 78.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.6e-55 220.7 167 67.1
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-54 217.2 165 69.1
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.9e-53 214.5 196 58.7
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 8.5e-46 189.1 130 67.7
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 4.2e-45 186.8 249 45.0
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.6e-44 184.9 98 90.8
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.6e-44 184.9 122 66.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.1e-42 178.7 378 29.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 3.1e-40 170.6 91 89.0
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 8.5e-38 162.5 119 69.7
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 4.8e-33 146.7 80 86.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.4e-32 144.4 93 78.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.5e-31 141.7 290 31.7
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.6e-31 141.0 124 54.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 3.6e-28 130.6 74 85.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 3.6e-28 130.6 100 64.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 6.7e-27 126.3 100 63.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-14 84.7 56 67.9
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 6.1e-12 76.6 67 56.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.0e-11 75.9 41 80.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-11 74.7 47 72.3
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.2e-10 72.4 100 44.0
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 9.1e-08 62.8 38 78.9
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.0e-07 61.6 35 80.0
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 1.7e-06 58.5 51 58.8


User provided reference genes

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