Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.3e-175 619.8 346 100.0
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 8.8e-132 474.2 372 70.7
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 4.4e-91 339.0 359 60.4
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.6e-88 330.5 384 59.4
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 4.5e-88 328.9 385 59.0
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 7.8e-88 328.2 385 59.7
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 2.3e-84 316.6 358 57.0
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 2.3e-63 246.9 363 51.8
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 4.4e-59 232.6 357 51.0
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.8e-52 210.7 381 41.2
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.5e-51 207.6 434 40.1
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 7.1e-49 198.7 386 43.8
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.3e-47 194.5 356 48.0
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.4e-44 184.5 382 43.7
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 1.2e-43 181.4 357 41.5
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.5e-43 181.0 387 39.8
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 2.6e-43 180.3 382 39.5
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 4.5e-43 179.5 426 39.9
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 1.4e-41 174.5 385 40.5
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 1.9e-41 174.1 386 38.3
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 7.1e-41 172.2 311 46.3
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 9.3e-41 171.8 377 44.6
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 3.9e-39 166.4 359 37.3
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 3.9e-39 166.4 372 40.1
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 3.3e-38 163.3 354 43.2
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 1.3e-37 161.4 378 37.8
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 4.8e-37 159.5 374 36.1
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 4.8e-37 159.5 374 36.1
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 6.2e-37 159.1 436 33.3
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.8e-36 157.5 349 35.5
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 5.3e-36 156.0 351 35.9
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 1.2e-35 154.8 353 36.0
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 1.7e-34 151.0 389 34.2
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 1.4e-33 147.9 368 35.9
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 2.5e-33 147.1 389 39.1
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 3.2e-33 146.7 394 39.1
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 4.2e-33 146.4 350 36.9
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 2.1e-32 144.1 353 36.3
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 7.9e-32 142.1 371 34.5
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.0e-31 141.7 436 32.3
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 3.0e-31 140.2 360 32.2
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.9e-30 137.5 354 34.7
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 3.3e-30 136.7 423 37.6
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 3.3e-30 136.7 353 34.3
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 5.6e-30 136.0 373 32.7
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 7.4e-30 135.6 357 42.0
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.3e-29 134.8 434 32.9
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 2.1e-29 134.0 414 31.4
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 4.8e-29 132.9 379 35.1
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 8.2e-29 132.1 444 30.2
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.1e-28 131.7 384 41.1
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 5.3e-28 129.4 364 34.6
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 9.0e-28 128.6 405 35.3
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.2e-27 128.3 223 43.0
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 2.6e-27 127.1 350 37.1
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 1.3e-26 124.8 391 32.2
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 6.5e-26 122.5 364 33.2
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 2.5e-25 120.6 374 36.9
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 2.5e-25 120.6 392 32.9
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 4.2e-25 119.8 343 37.9
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 5.5e-25 119.4 396 32.1
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 2.1e-24 117.5 437 28.1
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 3.5e-24 116.7 367 32.4
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 1.3e-23 114.8 441 33.1
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 3.9e-23 113.2 368 33.7
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 3.9e-23 113.2 410 32.7
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 1.1e-22 111.7 375 33.1
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 2.5e-22 110.5 360 32.8
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 3.3e-22 110.2 362 32.6
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 3.3e-22 110.2 393 35.4
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 5.7e-22 109.4 359 32.3
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 5.7e-22 109.4 370 31.6
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 9.7e-22 108.6 363 32.8
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 9.7e-22 108.6 350 31.7
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 1.3e-21 108.2 295 32.5
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 1.6e-21 107.8 367 33.8
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 4.8e-21 106.3 358 32.1
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.1e-20 105.1 355 37.5
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 1.8e-20 104.4 353 36.8
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 4.1e-20 103.2 440 31.1
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 4.1e-20 103.2 350 31.4
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 5.3e-20 102.8 375 34.4
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 9.0e-20 102.1 377 32.4
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 9.0e-20 102.1 299 35.5
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.5e-19 101.3 423 29.3
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.5e-19 101.3 394 36.3
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 2.6e-19 100.5 363 31.1
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 2.6e-19 100.5 348 37.9
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 3.4e-19 100.1 349 32.4
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 5.9e-19 99.4 351 32.8
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.0e-18 98.6 369 32.5
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 1.3e-18 98.2 365 34.8
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.4e-17 94.7 393 34.6
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 1.9e-17 94.4 380 35.0
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 2.5e-17 94.0 443 29.1
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 2.5e-17 94.0 349 30.4
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 5.5e-17 92.8 366 29.5
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 3.6e-16 90.1 353 30.0
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 4.6e-16 89.7 365 28.8
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 6.1e-16 89.4 423 31.7
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.4e-15 88.2 210 36.2
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.0e-15 87.0 257 44.7
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 3.3e-14 83.6 383 30.5
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 3.3e-14 83.6 456 26.1
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 2.8e-13 80.5 383 31.3
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 1.5e-11 74.7 206 32.5
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 1.5e-11 74.7 159 33.3
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 2.0e-11 74.3 367 30.8
Dinv44865 Davidia involucrata HOM05D006001 ORTHO05D006714 1.0e-10 72.0 283 37.5
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.3e-10 71.6 353 31.2
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 1.1e-09 68.6 94 46.8
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.9e-09 67.8 171 35.1
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 7.2e-09 65.9 323 26.9
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 9.4e-09 65.5 206 33.0
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.0e-07 62.0 215 32.1
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 3.0e-07 60.5 101 40.6
AUR62019098 Chenopodium quinoa HOM05D034668 ORTHO05D006714 2.0e-06 57.8 374 26.2
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 2.0e-06 57.8 178 32.6
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 3.3e-06 57.0 178 32.0
AUR62014355 Chenopodium quinoa HOM05D034668 ORTHO05D006714 9.7e-06 55.5 264 35.6
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 9.7e-06 55.5 350 26.6


User provided reference genes

Program Settings