Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 7.2e-62 240.4 117 100.0
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 2.3e-52 208.8 116 81.9
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 3.3e-51 204.9 117 82.9
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 3.3e-51 204.9 117 82.9
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 5.7e-51 204.1 117 82.9
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.3e-42 176.4 117 70.1
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.4e-41 172.2 117 67.5
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.1e-41 171.4 117 67.5
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.0e-39 166.8 117 65.8
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.3e-39 165.6 116 67.2
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.8e-39 164.9 115 67.8
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 6.6e-39 164.1 117 67.5
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 3.3e-38 161.8 118 66.9
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 3.3e-38 161.8 117 66.7
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.6e-37 159.5 117 65.8
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 4.7e-37 157.9 118 65.3
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 6.1e-37 157.5 117 64.1
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.4e-36 156.4 118 65.3
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.8e-36 156.0 117 64.1
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 3.0e-36 155.2 118 64.4
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.0e-36 154.8 120 63.3
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 4.0e-36 154.8 117 65.0
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 6.8e-36 154.1 117 60.7
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 8.9e-36 153.7 109 64.2
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.4e-35 151.4 117 62.4
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 5.7e-35 151.0 120 60.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 5.7e-35 151.0 120 60.8
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 5.7e-35 151.0 120 60.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 5.7e-35 151.0 120 60.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 5.7e-35 151.0 120 60.8
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 5.7e-35 151.0 120 60.8
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 5.7e-35 151.0 118 62.7
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.7e-34 149.4 120 60.0
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 3.7e-34 148.3 125 58.4
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.9e-34 147.9 120 60.0
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 6.3e-34 147.5 120 60.8
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 8.3e-34 147.1 120 60.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 8.3e-34 147.1 120 60.0
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 8.3e-34 147.1 120 60.0
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.4e-33 145.6 121 60.3
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 2.4e-33 145.6 120 59.2
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 2.4e-33 145.6 120 59.2
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.1e-33 144.8 120 60.0
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 5.4e-33 144.4 110 60.9
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 7.0e-33 144.1 120 59.2
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 9.2e-33 143.7 120 59.2
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.2e-33 143.7 121 61.2
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.2e-32 143.3 121 61.2
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.6e-32 142.9 121 59.5
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.6e-32 142.9 120 59.2
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.6e-32 142.9 121 61.2
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 2.0e-32 142.5 124 57.3
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 3.5e-32 141.7 120 57.5
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 3.5e-32 141.7 125 59.2
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 3.5e-32 141.7 125 59.2
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.3e-31 139.0 118 58.5
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 6.6e-31 137.5 118 55.1
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 8.6e-31 137.1 116 58.6
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 1.9e-30 136.0 124 55.6
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 2.5e-30 135.6 120 58.3
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 5.6e-30 134.4 122 54.9
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 9.5e-30 133.7 121 54.5
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.2e-29 133.3 116 57.8
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.2e-29 133.3 112 61.6
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.6e-29 132.9 120 55.0
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 2.8e-29 132.1 120 55.0
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 3.6e-29 131.7 120 55.0
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 3.6e-29 131.7 120 53.3
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 6.1e-29 131.0 122 54.1
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 54.2
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 52.5
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.3e-28 129.0 121 57.0
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.3e-28 129.0 125 49.6
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 2.0e-27 125.9 122 52.5
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 2.0e-27 125.9 119 50.4
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.4e-27 125.2 120 52.5
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.4e-27 125.2 120 52.5
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 4.4e-27 124.8 120 52.5
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 4.4e-27 124.8 120 52.5
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 9.8e-27 123.6 118 53.4
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 9.8e-27 123.6 119 48.7
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 54.2
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 54.2
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 2.2e-26 122.5 120 54.2
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.2e-26 122.5 119 50.4
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 8.3e-26 120.6 116 50.0
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.4e-25 119.8 125 48.0
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 3.5e-24 115.2 119 43.7
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 3.5e-24 115.2 117 49.6
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 4.6e-24 114.8 125 47.2
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 4.6e-24 114.8 110 50.0
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.0e-23 113.6 118 46.6
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.7e-23 112.8 116 50.0
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 6.6e-23 110.9 122 50.0
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 6.6e-23 110.9 110 47.3
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 5.6e-22 107.8 106 52.8
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 2.1e-21 105.9 125 43.2
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 6.2e-21 104.4 119 47.1
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 1.4e-20 103.2 103 53.4
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.8e-20 102.8 118 43.2
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 3.1e-20 102.1 96 51.0
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.5e-19 99.8 94 51.1
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 9.8e-19 97.1 74 62.2
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.3e-18 96.7 77 62.3
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 6.4e-18 94.4 118 42.4
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.4e-17 93.2 119 39.5
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.9e-17 92.8 67 65.7
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 4.6e-16 88.2 151 34.4
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 6.0e-16 87.8 106 41.5
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-15 86.7 78 52.6
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.3e-15 85.9 62 66.1
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 5.1e-15 84.7 70 58.6
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 6.6e-15 84.3 122 36.9
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 8.6e-15 84.0 54 70.4
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 8.6e-15 84.0 89 46.1
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.5e-14 82.4 93 47.3
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 4.3e-14 81.6 65 63.1
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 6.2e-13 77.8 65 61.5
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.4e-12 76.6 108 39.8
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 5.2e-12 74.7 67 58.2
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 6.8e-12 74.3 53 56.6
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 6.8e-12 74.3 67 58.2
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.5e-11 73.2 61 49.2
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.0e-11 72.8 49 67.3
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 2.6e-11 72.4 87 49.4
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.4e-11 72.0 73 52.1
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.7e-10 69.7 53 64.2
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 8.3e-10 67.4 58 51.7
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.2e-09 65.5 57 56.1
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 5.4e-09 64.7 40 70.0
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 1.2e-08 63.5 128 30.5
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 7.8e-08 60.8 55 52.7
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 5.1e-07 58.2 75 40.0
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 8.6e-07 57.4 39 59.0
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 5.6e-06 54.7 113 33.6


User provided reference genes

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