Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 0.0e+00 1655.2 914 100.0
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 0.0e+00 1252.3 926 76.0
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 0.0e+00 1244.6 867 78.9
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 0.0e+00 1243.4 867 79.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 6.3e-312 1073.5 931 65.1
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 9.2e-306 1053.5 919 65.0
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.5e-300 1036.2 939 64.4
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.7e-296 1022.7 938 63.4
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 4.3e-295 1018.1 934 63.8
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.1e-290 1003.4 919 63.4
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 1.6e-289 999.6 911 62.8
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 8.7e-288 993.8 937 62.6
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 2.6e-284 982.2 928 63.0
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 4.5e-284 981.5 923 62.4
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 3.5e-281 971.8 916 61.9
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 6.0e-281 971.1 928 61.1
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 1.3e-280 969.9 920 61.8
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.1e-277 960.3 924 62.6
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 1.6e-273 946.4 915 58.8
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 3.3e-271 938.7 922 59.2
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 1.8e-269 932.9 916 59.6
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 4.0e-269 931.8 922 59.7
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 5.3e-269 931.4 929 59.4
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.5e-268 929.9 921 59.1
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.7e-267 926.4 915 59.7
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 8.4e-267 924.1 929 58.8
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.1e-266 923.7 925 59.1
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.9e-266 922.9 878 60.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 3.0e-264 915.6 926 60.5
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 3.0e-264 915.6 929 57.9
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.9e-264 915.2 889 61.2
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 6.7e-264 914.4 934 58.7
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.5e-263 913.3 930 58.8
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 9.7e-263 910.6 933 58.4
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.3e-262 910.2 919 58.3
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.2e-262 909.4 878 60.4
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 2.8e-262 909.1 916 58.6
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 4.8e-262 908.3 929 57.7
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 8.2e-262 907.5 886 61.4
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 6.9e-261 904.4 923 58.8
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 6.9e-261 904.4 886 61.4
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.2e-260 903.7 916 58.0
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 3.8e-259 898.7 922 58.8
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 6.5e-259 897.9 960 57.0
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 6.5e-259 897.9 943 57.8
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.7e-257 892.5 922 58.1
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 2.7e-257 892.5 926 58.0
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 3.6e-257 892.1 844 62.2
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 3.9e-256 888.6 920 57.5
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 5.1e-256 888.3 928 57.8
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 6.7e-256 887.9 917 57.7
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 8.8e-256 887.5 933 57.8
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 3.7e-254 882.1 922 57.9
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 6.3e-254 881.3 940 57.7
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 6.3e-254 881.3 935 56.9
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 3.1e-253 879.0 937 57.4
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.3e-253 878.2 915 57.6
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 4.5e-252 875.2 883 58.0
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 7.7e-252 874.4 913 57.9
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 5.0e-251 871.7 881 58.5
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 9.4e-250 867.5 922 55.5
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.1e-247 860.5 919 57.2
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.3e-246 857.1 833 61.1
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 2.8e-246 855.9 935 55.9
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 6.3e-246 854.7 931 54.7
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 3.1e-245 852.4 923 55.7
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 2.0e-244 849.7 927 55.3
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 7.7e-244 847.8 921 55.7
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.7e-243 846.7 871 58.7
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 2.2e-243 846.3 877 57.8
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.2e-243 846.3 876 56.6
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 8.5e-243 844.3 828 58.3
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.1e-242 844.0 874 59.3
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 3.0e-240 835.9 927 54.0
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 1.1e-239 833.9 858 55.2
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.7e-238 830.1 803 62.0
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.7e-235 820.1 938 55.0
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.6e-233 813.5 880 55.5
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 7.0e-229 798.1 883 54.1
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 8.0e-225 784.6 851 55.6
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 5.2e-224 781.9 883 53.5
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 3.4e-223 779.2 831 55.0
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 9.8e-223 777.7 895 54.7
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 1.4e-221 773.9 880 52.5
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.1e-221 772.7 736 61.0
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.1e-221 772.3 886 53.3
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.9e-219 766.1 934 51.7
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 3.8e-219 765.8 881 52.6
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.4e-215 752.7 894 51.5
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.9e-214 749.6 878 52.4
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.7e-214 749.2 886 51.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 7.0e-213 745.0 884 51.8
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 7.8e-212 741.5 853 53.1
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 4.7e-209 732.3 878 51.5
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.1e-208 729.6 909 48.7
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-206 723.8 867 49.8
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.6e-204 717.2 889 49.9
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 6.0e-204 715.3 871 49.9
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 5.0e-203 712.2 916 48.9
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 5.6e-202 708.8 831 53.4
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 6.2e-201 705.3 870 49.3
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 6.2e-201 705.3 855 50.2
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.4e-200 704.1 884 48.5
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-200 703.7 879 48.8
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 2.1e-196 690.3 579 68.6
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.8e-192 677.2 771 54.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 6.8e-192 675.2 879 48.5
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 6.4e-190 668.7 892 47.2
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.5e-186 657.5 873 47.3
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 1.2e-185 654.4 680 59.1
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.9e-182 643.3 841 48.8
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.9e-182 643.3 612 59.6
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.9e-182 642.5 884 46.6
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.9e-181 640.6 842 49.2
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 9.3e-181 638.3 629 61.0
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-169 601.3 873 46.8
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-165 587.8 880 45.7
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.9e-151 539.3 1068 37.4
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 6.7e-139 499.2 839 41.4
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 4.8e-137 493.0 440 62.5
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.5e-130 471.5 413 66.1
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.1e-122 445.3 900 38.0
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-122 444.5 462 58.0
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 4.4e-122 443.4 791 41.8
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 9.1e-112 409.1 1055 33.6
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 2.7e-103 380.9 930 36.1
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 5.0e-102 376.7 873 36.2
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 4.3e-101 373.6 351 59.8
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 2.3e-99 367.9 1003 33.6
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.1e-93 349.0 352 55.4
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.8e-92 344.4 248 72.2
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.4e-91 342.0 285 63.9
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 4.9e-89 333.6 898 33.0
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 4.9e-89 333.6 898 33.0
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 4.7e-76 290.4 210 71.4
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.4e-75 288.9 986 30.0
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 4.4e-74 283.9 327 51.1
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 5.4e-72 276.9 242 61.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 2.9e-65 254.6 419 45.3
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 5.4e-64 250.4 411 44.3
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 7.8e-63 246.5 411 44.0
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-62 245.4 418 43.3
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 2.3e-62 245.0 372 46.5
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 4.0e-59 234.2 448 37.7
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 9.9e-58 229.6 409 43.0
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 2.2e-57 228.4 756 30.7
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.5e-50 204.1 373 41.6
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 2.4e-48 198.4 317 44.8
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 4.6e-47 194.1 857 26.3
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.0e-46 193.0 308 44.5
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 4.8e-44 184.1 180 63.9
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 3.1e-43 181.4 182 56.6
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.3e-43 180.6 332 43.7
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.9e-41 174.9 247 42.1
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 3.8e-41 174.5 130 66.9
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 7.9e-39 166.8 220 45.5
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.8e-38 165.6 207 50.7
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 4.8e-36 157.5 169 55.6
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.0e-34 152.1 267 39.0
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 9.3e-32 143.3 317 38.8
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 1.6e-31 142.5 316 38.3
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.5e-29 136.0 131 53.4
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.9e-29 135.6 677 25.6
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 2.5e-29 135.2 988 24.1
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 9.7e-29 133.3 132 57.6
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 2.6e-26 125.2 273 39.9
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.9e-25 121.7 125 64.0
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 8.5e-25 120.2 273 38.5
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.1e-21 109.8 836 24.0
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.7e-15 87.8 187 38.0
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 4.7e-15 87.8 259 35.5
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 6.1e-15 87.4 167 34.1
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.1e-13 83.2 55 74.5
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.3e-12 79.7 60 66.7
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 7.7e-10 70.5 79 54.4
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 6.1e-07 60.8 55 52.7
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 2.3e-06 58.9 100 35.0


User provided reference genes

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