Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.8e-24 115.2 59 100.0
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.1e-15 85.9 57 77.2
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 7.4e-15 83.2 56 76.8
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.3e-14 82.4 58 74.1
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 2.8e-14 81.3 50 80.0
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 4.8e-14 80.5 57 70.2
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.1e-13 79.3 58 72.4
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 1.4e-13 79.0 50 76.0
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 2.4e-13 78.2 52 71.2
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 4.1e-13 77.4 51 74.5
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 4.1e-13 77.4 60 70.0
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 5.3e-13 77.0 57 70.2
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 5.3e-13 77.0 63 65.1
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 6.9e-13 76.6 55 67.3
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.2e-12 75.9 52 71.2
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.2e-12 75.9 61 67.2
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.2e-12 75.9 54 70.4
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 1.5e-12 75.5 55 65.5
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.5e-12 75.5 57 66.7
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.5e-12 75.5 56 69.6
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 2.0e-12 75.1 61 63.9
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 2.6e-12 74.7 55 65.5
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 2.6e-12 74.7 56 67.9
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 3.4e-12 74.3 55 67.3
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 3.4e-12 74.3 51 70.6
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 3.4e-12 74.3 53 67.9
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 4.5e-12 73.9 58 65.5
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 5.9e-12 73.6 56 64.3
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 7.7e-12 73.2 55 69.1
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 7.7e-12 73.2 55 69.1
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.0e-11 72.8 55 63.6
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.0e-11 72.8 55 63.6
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.0e-11 72.8 55 63.6
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.0e-11 72.8 55 63.6
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.0e-11 72.8 47 76.6
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.0e-11 72.8 73 58.9
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.3e-11 72.4 57 66.7
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 1.7e-11 72.0 58 63.8
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.7e-11 72.0 52 67.3
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.7e-11 72.0 48 72.9
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 2.2e-11 71.6 55 63.6
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.2e-11 71.6 57 66.7
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 2.9e-11 71.2 49 67.3
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 3.8e-11 70.9 55 61.8
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 3.8e-11 70.9 55 61.8
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 3.8e-11 70.9 54 63.0
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 3.8e-11 70.9 48 75.0
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 6.5e-11 70.1 47 72.3
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 6.5e-11 70.1 48 68.8
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 8.5e-11 69.7 50 68.0
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 8.5e-11 69.7 44 77.3
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.1e-10 69.3 43 76.7
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.9e-10 68.6 57 61.4
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.9e-10 68.6 55 67.3
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 5.5e-10 67.0 56 66.1
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 5.5e-10 67.0 55 60.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 5.5e-10 67.0 43 76.7
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 5.5e-10 67.0 52 63.5
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 7.2e-10 66.6 56 60.7
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 1.2e-09 65.9 51 64.7
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.6e-09 65.5 50 64.0
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.6e-09 65.5 58 60.3
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.6e-09 65.5 58 63.8
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 2.1e-09 65.1 48 66.7
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 2.7e-09 64.7 50 66.0
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 3.6e-09 64.3 44 70.5
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 4.7e-09 63.9 50 62.0
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 6.1e-09 63.5 60 61.7
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 1.4e-08 62.4 49 65.3
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 1.4e-08 62.4 47 66.0
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 2.3e-08 61.6 45 64.4
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 3.0e-08 61.2 50 64.0
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 5.1e-08 60.5 50 60.0
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 5.1e-08 60.5 55 60.0
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.1e-08 60.5 58 58.6
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 5.1e-08 60.5 50 64.0
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 5.1e-08 60.5 44 70.5
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 6.7e-08 60.1 50 60.0
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 6.7e-08 60.1 51 62.7
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.1e-07 59.3 60 58.3
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 1.1e-07 59.3 50 62.0
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 2.6e-07 58.2 44 68.2
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.3e-07 57.8 49 61.2
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 7.4e-07 56.6 55 58.2
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 9.7e-07 56.2 51 58.8
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 9.7e-07 56.2 60 51.7
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 3.7e-06 54.3 48 54.2


User provided reference genes

Program Settings