Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.6e-52 208.4 101 100.0
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 2.6e-44 181.8 100 88.0
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 2.1e-38 162.2 100 80.0
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 3.7e-38 161.4 100 78.0
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 4.8e-38 161.0 100 78.0
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.4e-37 159.5 96 78.1
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 3.1e-37 158.3 100 72.0
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 4.1e-37 157.9 100 78.0
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 2.0e-36 155.6 100 77.0
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 2.6e-36 155.2 100 76.0
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 3.4e-36 154.8 92 78.3
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 5.9e-36 154.1 100 76.0
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 7.6e-36 153.7 100 71.0
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 1.7e-35 152.5 100 75.0
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.7e-35 152.5 100 72.0
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 3.8e-35 151.4 102 75.5
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 3.8e-35 151.4 100 72.0
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 8.4e-35 150.2 100 70.0
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 1.1e-34 149.8 100 69.0
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.1e-34 149.8 100 71.0
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 1.4e-34 149.4 91 81.3
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.4e-34 149.4 91 81.3
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 3.2e-34 148.3 100 72.0
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.2e-34 148.3 91 80.2
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.2e-34 148.3 91 80.2
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 7.2e-34 147.1 95 75.8
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 9.3e-34 146.7 100 72.0
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 9.3e-34 146.7 91 79.1
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 9.3e-34 146.7 91 78.0
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 1.2e-33 146.4 101 74.3
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.2e-33 146.4 100 67.0
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 1.2e-33 146.4 99 70.7
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.2e-33 146.4 100 70.0
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 2.1e-33 145.6 100 67.0
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 3.5e-33 144.8 100 74.0
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 3.5e-33 144.8 100 68.0
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 3.5e-33 144.8 99 71.7
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 3.5e-33 144.8 99 68.7
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 4.6e-33 144.4 100 71.0
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 6.1e-33 144.1 100 72.0
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 6.1e-33 144.1 100 71.0
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 7.9e-33 143.7 101 72.3
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 7.9e-33 143.7 101 72.3
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.3e-32 142.9 98 70.4
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 1.3e-32 142.9 100 67.0
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 3.0e-32 141.7 118 62.7
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 8.7e-32 140.2 98 69.4
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 8.7e-32 140.2 101 69.3
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 3.3e-31 138.3 100 68.0
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.7e-31 137.5 101 65.3
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.7e-31 137.5 101 65.3
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 9.7e-31 136.7 101 69.3
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 1.3e-30 136.3 100 69.0
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.6e-30 136.0 100 68.0
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 1.6e-30 136.0 100 67.0
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 1.6e-30 136.0 100 67.0
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 2.2e-30 135.6 94 74.5
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 2.8e-30 135.2 99 71.7
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 2.8e-30 135.2 94 71.3
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 2.8e-30 135.2 94 72.3
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.7e-30 134.8 94 70.2
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 4.8e-30 134.4 101 65.3
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 4.8e-30 134.4 91 70.3
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 4.8e-30 134.4 95 69.5
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 6.3e-30 134.0 99 66.7
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 6.3e-30 134.0 92 72.8
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 6.3e-30 134.0 92 72.8
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 1.8e-29 132.5 91 69.2
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 2.4e-29 132.1 99 66.7
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 2.4e-29 132.1 91 70.3
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 3.1e-29 131.7 101 64.4
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 3.1e-29 131.7 101 64.4
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 3.1e-29 131.7 101 64.4
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 6.9e-29 130.6 94 69.1
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 6.9e-29 130.6 98 70.4
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 1.5e-28 129.4 89 69.7
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 2.6e-28 128.6 100 64.0
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 2.6e-28 128.6 107 63.6
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 5.9e-28 127.5 89 68.5
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 5.0e-27 124.4 100 60.0
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 8.5e-27 123.6 94 66.0
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 1.4e-26 122.9 104 60.6
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 2.5e-26 122.1 100 59.0
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 2.5e-26 122.1 85 69.4
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 5.5e-26 120.9 91 61.5
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 5.5e-26 120.9 91 63.7
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 5.5e-26 120.9 103 60.2
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 7.2e-26 120.6 100 57.0
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 9.4e-26 120.2 94 60.6
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 9.4e-26 120.2 91 60.4
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 1.6e-25 119.4 101 64.4
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 1.6e-25 119.4 100 57.0
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 2.1e-25 119.0 101 60.4
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 2.7e-25 118.6 100 62.0
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 3.6e-25 118.2 94 61.7
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 5.1e-24 114.4 94 55.3
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 5.1e-24 114.4 100 56.0
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 8.8e-24 113.6 85 60.0
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 1.1e-23 113.2 87 58.6
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 1.7e-22 109.4 98 59.2
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 4.5e-20 101.3 55 81.8
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.3e-19 99.8 85 62.4
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 9.4e-18 93.6 64 73.4
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 3.6e-17 91.7 85 58.8
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 7.9e-17 90.5 84 52.4
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 3.0e-16 88.6 87 56.3
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 3.9e-16 88.2 102 43.1
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 3.9e-16 88.2 54 77.8
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 5.1e-16 87.8 87 55.2
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 5.1e-16 87.8 100 43.0
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 8.8e-16 87.0 87 55.2
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 1.5e-15 86.3 99 42.4
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 2.6e-15 85.5 96 43.8
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 3.3e-15 85.1 87 54.0
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-14 83.2 52 73.1
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.1e-13 80.1 55 69.1
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 5.3e-13 77.8 48 72.9
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 1.6e-12 76.3 85 51.8
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 5.9e-12 74.3 104 43.3
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 5.9e-12 74.3 104 43.3
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 7.7e-12 73.9 101 44.6
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.5e-10 68.9 55 58.2
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.7e-09 65.5 36 75.0
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.7e-09 65.5 36 75.0
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 6.1e-09 64.3 59 57.6
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 4.4e-07 58.2 104 32.7
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 1.3e-06 56.6 76 44.7


User provided reference genes

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