Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.0e-278 961.8 511 100.0
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 2.7e-185 652.5 479 67.6
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 4.0e-181 638.6 480 67.3
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 4.0e-181 638.6 480 65.0
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 1.3e-179 633.6 479 67.2
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.8e-179 631.7 484 64.3
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 1.1e-178 630.6 484 65.5
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 2.4e-178 629.4 441 70.5
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 3.1e-178 629.0 479 67.0
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.1e-178 628.6 484 63.8
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.2e-177 627.1 488 63.7
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 1.6e-177 626.7 472 66.7
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.5e-177 625.2 488 63.5
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.0e-176 624.0 488 63.3
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.3e-176 623.6 485 64.9
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 2.2e-176 622.9 468 68.4
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 8.5e-176 620.9 479 68.1
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.1e-175 620.5 480 65.2
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.8e-173 613.2 480 65.6
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 3.0e-173 612.5 478 66.5
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 3.0e-173 612.5 469 66.1
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 1.5e-172 610.1 364 79.7
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 5.7e-172 608.2 482 65.6
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 5.7e-172 608.2 480 66.5
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.8e-170 603.2 484 62.6
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.8e-170 603.2 484 62.6
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 5.4e-170 601.7 479 63.3
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.6e-169 600.1 519 61.8
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 3.5e-169 599.0 461 65.1
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 4.5e-169 598.6 480 64.2
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.5e-167 593.6 482 63.9
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 3.3e-167 592.4 488 62.5
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 7.3e-167 591.3 482 63.3
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 1.2e-166 590.5 485 61.6
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.2e-166 590.5 484 63.6
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 1.2e-166 590.5 480 65.8
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.8e-165 586.6 373 74.3
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.6e-164 582.8 479 63.0
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 5.7e-164 581.6 417 67.9
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 5.7e-164 581.6 389 72.2
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.7e-163 580.1 416 68.3
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 1.6e-161 573.5 399 68.7
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 3.5e-161 572.4 439 64.7
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.0e-160 569.3 447 64.9
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 3.0e-160 569.3 488 61.7
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 8.6e-160 567.8 378 72.0
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 8.6e-160 567.8 480 62.7
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 1.5e-159 567.0 378 72.0
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.5e-159 567.0 378 72.2
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 2.5e-159 566.2 377 71.9
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 2.5e-159 566.2 378 72.5
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 5.6e-159 565.1 451 63.2
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.8e-158 562.8 378 71.4
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 4.7e-158 562.0 378 72.0
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 1.0e-157 560.8 378 71.2
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 1.0e-157 560.8 403 68.0
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 1.8e-157 560.1 378 74.1
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 5.2e-157 558.5 444 63.3
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 8.9e-157 557.8 442 63.6
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 8.9e-157 557.8 454 62.8
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 3.4e-156 555.8 369 71.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 4.4e-156 555.4 442 63.3
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 4.4e-156 555.4 479 60.1
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 4.4e-156 555.4 454 62.3
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 1.7e-155 553.5 376 71.0
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 1.7e-155 553.5 571 56.0
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 3.7e-155 552.4 376 70.7
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 4.9e-155 552.0 425 68.5
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 6.4e-155 551.6 464 60.6
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 3.2e-154 549.3 485 59.2
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 5.4e-154 548.5 464 60.8
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 9.2e-154 547.7 420 64.8
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 1.2e-153 547.4 444 64.0
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 1.2e-153 547.4 447 62.9
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 1.6e-153 547.0 464 60.8
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 4.6e-153 545.4 323 78.0
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 4.6e-153 545.4 443 61.4
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 6.0e-153 545.0 482 59.5
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 1.3e-152 543.9 361 72.3
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.3e-152 543.9 344 74.1
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 2.3e-152 543.1 441 61.7
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.5e-151 540.4 374 70.3
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 1.9e-151 540.0 385 71.2
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 1.9e-151 540.0 448 62.3
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 6.2e-150 535.0 466 65.0
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 4.0e-149 532.3 378 69.0
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 2.6e-148 529.6 385 63.6
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 9.8e-148 527.7 459 59.0
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.3e-147 527.3 462 60.4
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.1e-145 520.0 472 60.2
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 1.0e-144 517.7 481 59.9
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 2.5e-143 513.1 467 58.0
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 9.5e-143 511.1 449 61.2
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 1.4e-141 507.3 397 63.2
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.2e-140 504.2 483 61.5
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 7.6e-140 501.5 483 61.3
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 1.3e-139 500.7 286 81.8
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 4.9e-139 498.8 348 71.8
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.5e-132 477.2 368 63.9
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 7.1e-130 468.4 364 62.4
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 6.2e-126 455.3 376 59.8
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 5.8e-116 422.2 353 60.6
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.8e-116 422.2 335 59.7
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 9.9e-116 421.4 367 59.1
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.7e-115 420.6 272 72.1
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.1e-109 399.8 294 62.6
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 4.6e-105 386.0 311 63.3
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 2.9e-91 340.1 247 68.4
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 5.0e-91 339.3 244 66.0
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 1.4e-82 311.2 376 48.9
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 4.8e-78 296.2 239 59.8
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.8e-69 267.7 204 56.9
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 9.1e-69 265.4 204 55.9
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 2.0e-68 264.2 306 45.1
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-67 261.5 204 55.9
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.2e-67 260.8 204 54.9
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.1e-65 254.2 316 42.4
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.1e-50 205.3 210 50.0
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 3.3e-42 177.2 160 62.5
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 8.9e-32 142.5 98 59.2
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 9.9e-31 139.0 141 56.0
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 4.8e-09 67.0 272 22.8
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 8.1e-09 66.2 266 22.2
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.1e-08 65.9 246 24.0
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.4e-08 65.5 286 24.8
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.5e-07 62.0 270 21.1
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.5e-07 62.0 281 22.1
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.0e-07 61.6 235 21.3
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 2.0e-07 61.6 90 46.7
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 9.9e-07 59.3 158 21.5
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.3e-06 58.9 158 24.1
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 6.4e-06 56.6 136 24.3


User provided reference genes

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