Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2753.4 1400 100.0
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2051.9 1572 71.7
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2035.8 1573 71.3
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2025.4 1576 70.4
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 1951.0 1583 69.0
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 1787.7 1572 63.7
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 1771.1 1573 62.9
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1769.6 1561 63.7
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 1769.6 1575 63.7
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 1754.2 1576 62.9
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 1748.8 1576 63.1
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1741.5 1575 62.7
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 1738.8 1575 62.5
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 1734.5 1571 62.3
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 1728.0 1575 62.7
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 1717.6 1574 61.9
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 1716.8 1581 61.7
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 1716.0 1573 61.9
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 1714.1 1568 62.2
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 1711.0 1569 61.8
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 1707.2 1571 62.0
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 1705.3 1579 61.6
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1699.9 1574 61.6
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 1699.5 1562 61.4
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1697.9 1583 61.0
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 1697.9 1571 61.4
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1695.6 1583 61.2
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 1694.1 1574 61.4
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1693.3 1574 61.4
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 1691.0 1571 61.2
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 1691.0 1513 63.6
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 1674.4 1578 60.5
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 1672.1 1571 59.8
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 1666.7 1566 59.9
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1662.9 1523 61.7
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1644.8 1575 59.3
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 1637.5 1574 59.7
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 1637.5 1578 59.7
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1636.7 1569 59.5
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 1629.0 1574 58.9
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1617.1 1568 59.0
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 1608.2 1573 59.8
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 1602.4 1632 57.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 1602.0 1572 58.4
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 1599.7 1578 58.9
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 1597.4 1574 58.3
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 1596.3 1573 58.0
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1586.6 1565 58.1
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 1586.6 1565 58.1
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 1586.6 1577 57.7
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 1581.2 1560 59.4
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 1578.5 1584 58.6
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 1578.5 1636 57.0
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 1573.5 1575 58.0
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 1572.0 1553 58.5
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 1563.5 1559 57.8
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1560.0 1553 58.5
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 1557.3 1558 58.1
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 1554.7 1552 57.7
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 1545.4 1571 56.0
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 1538.9 1571 55.8
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 1525.8 1556 56.7
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1523.8 1548 57.6
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 1516.1 1527 57.4
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 1503.4 1531 57.0
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1478.8 1565 55.9
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 1473.0 1542 56.6
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 1465.3 1561 55.0
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1458.7 1537 55.8
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1454.1 1365 60.7
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 1452.6 1553 54.7
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 1451.0 1541 55.1
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 1446.4 1503 56.4
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 1445.6 1531 55.8
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 1440.6 1563 54.8
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 1422.1 1453 57.1
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1397.5 1520 54.7
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1394.8 1509 54.4
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 1383.6 1497 54.8
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 1379.4 1539 54.0
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1377.8 1424 56.5
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 1362.1 1508 54.0
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 1360.5 1505 53.9
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 1359.4 1504 54.3
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1345.5 1505 53.3
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1344.3 1348 57.7
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 1343.9 1507 53.6
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1340.5 1576 51.1
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1336.6 1504 53.3
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1335.1 1353 57.4
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 1330.5 1514 54.4
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1313.9 1231 60.6
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1300.4 1592 49.3
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1274.2 1493 51.8
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 1269.6 1504 52.0
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1269.2 1499 51.9
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1269.2 1499 51.9
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1260.4 1514 51.1
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1248.4 1497 51.8
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1226.5 1261 55.9
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1189.5 1523 46.9
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1166.8 1533 46.8
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1144.8 1208 54.9
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1142.9 1554 46.7
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1130.2 1355 51.3
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 4.1e-297 1025.4 1163 53.8
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 3.2e-265 919.5 1051 53.0
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 2.4e-257 893.3 884 57.9
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 4.0e-252 875.9 1491 41.5
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 7.4e-246 855.1 1711 37.3
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 4.7e-224 782.7 1512 37.1
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 7.4e-214 748.8 843 54.1
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 2.9e-210 736.9 1655 34.7
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.5e-209 733.8 1658 34.9
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.8e-204 717.6 1697 33.8
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.2e-198 698.4 1043 44.0
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 2.7e-195 687.2 678 58.1
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 9.8e-190 668.7 1422 35.7
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.6e-187 661.4 878 47.0
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 5.0e-186 656.4 501 69.9
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 4.1e-180 636.7 649 54.7
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.9e-153 548.1 598 53.2
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 7.3e-153 546.2 481 64.7
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 9.0e-151 539.3 475 62.1
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 1.8e-135 488.4 546 53.5
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.9e-130 470.7 431 58.2
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 5.7e-129 466.8 360 66.9
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 7.6e-126 456.4 338 69.2
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 1.4e-119 435.6 482 54.1
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 2.1e-107 395.2 286 68.5
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 6.3e-104 383.6 259 78.0
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 1.8e-98 365.5 1031 31.9
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 2.3e-90 338.6 381 53.8
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 3.0e-90 338.2 436 50.2
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 1.2e-62 246.5 197 68.0
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 1.0e-61 243.4 339 45.4
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.1e-58 233.4 301 51.2
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 1.2e-57 229.9 303 50.5
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 3.7e-56 224.9 306 50.3
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 8.9e-42 177.2 133 71.4
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 3.0e-37 162.2 105 78.1
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 3.9e-37 161.8 106 77.4
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 6.6e-37 161.0 114 73.7
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 1.3e-35 156.8 135 64.4
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 4.9e-32 144.8 87 80.5
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 3.3e-20 105.5 109 53.2
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 3.2e-15 89.0 80 66.2
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 7.9e-14 84.3 143 39.9
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.0e-13 84.0 121 42.1
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 6.7e-13 81.3 81 58.0
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 4.3e-12 78.6 215 26.0
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 7.4e-12 77.8 58 69.0
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.3e-11 77.0 78 56.4
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 6.3e-11 74.7 110 42.7
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 6.3e-11 74.7 39 84.6
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 6.3e-11 74.7 39 84.6
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 6.3e-11 74.7 39 84.6
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-10 73.9 34 94.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-10 73.9 34 94.1
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.4e-10 72.8 39 82.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.0e-09 69.7 176 30.1


User provided reference genes

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