Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.8e-11 71.2 37 100.0
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 4.1e-11 70.1 37 97.3
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 5.3e-11 69.7 37 97.3
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 9.1e-11 68.9 37 94.6
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.2e-10 68.6 36 94.4
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 1.2e-10 68.6 37 94.6
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 1.2e-10 68.6 37 94.6
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-10 68.6 37 94.6
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-10 68.6 37 94.6
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 1.2e-10 68.6 37 94.6
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.2e-10 68.6 36 94.4
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.5e-10 68.2 36 97.2
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 1.5e-10 68.2 36 94.4
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.5e-10 68.2 36 97.2
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.0e-10 67.8 35 97.1
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.0e-10 67.8 35 97.1
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.0e-10 67.8 36 91.7
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 2.0e-10 67.8 35 97.1
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 2.0e-10 67.8 36 91.7
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 2.6e-10 67.4 35 97.1
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 3.4e-10 67.0 36 91.7
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 3.4e-10 67.0 36 91.7
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 4.5e-10 66.6 35 94.3
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 4.5e-10 66.6 35 94.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 4.5e-10 66.6 35 94.3
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 4.5e-10 66.6 35 94.3
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 4.5e-10 66.6 35 94.3
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 4.5e-10 66.6 35 94.3
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 4.5e-10 66.6 35 94.3
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 5.9e-10 66.2 37 94.6
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 5.9e-10 66.2 37 94.6
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 5.9e-10 66.2 37 89.2
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 5.9e-10 66.2 36 91.7
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 5.9e-10 66.2 36 91.7
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 5.9e-10 66.2 36 88.9
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 7.7e-10 65.9 35 94.3
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 7.7e-10 65.9 37 89.2
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 7.7e-10 65.9 37 89.2
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 7.7e-10 65.9 35 91.4
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 7.7e-10 65.9 35 91.4
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 7.7e-10 65.9 37 89.2
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 7.7e-10 65.9 36 94.4
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 7.7e-10 65.9 36 94.4
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 7.7e-10 65.9 37 89.2
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 1.0e-09 65.5 35 94.3
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.0e-09 65.5 36 91.7
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 1.0e-09 65.5 36 91.7
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.7e-09 64.7 37 86.5
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 1.7e-09 64.7 37 86.5
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 1.7e-09 64.7 37 86.5
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.7e-09 64.7 37 86.5
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.7e-09 64.7 37 86.5
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 1.7e-09 64.7 37 86.5
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.7e-09 64.7 36 88.9
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 1.7e-09 64.7 35 94.3
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.2e-09 64.3 35 91.4
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 2.2e-09 64.3 37 91.9
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 2.9e-09 63.9 35 94.3
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 3.8e-09 63.5 35 91.4
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 3.8e-09 63.5 36 88.9
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 5.0e-09 63.2 36 88.9
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 6.5e-09 62.8 36 83.3
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.1e-08 62.0 35 91.4
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 1.1e-08 62.0 37 86.5
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 1.1e-08 62.0 35 91.4
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 2.5e-08 60.8 35 91.4
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 5.5e-08 59.7 35 88.6
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 5.5e-08 59.7 35 88.6
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 7.2e-08 59.3 35 80.0
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 2.1e-07 57.8 37 81.1
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.6e-07 57.0 36 80.6
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 7.9e-07 55.8 35 82.9
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 1.4e-06 55.1 32 84.4
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.4e-06 55.1 30 93.3
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 2.3e-06 54.3 29 93.1
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.3e-06 54.3 28 100.0
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.3e-06 54.3 28 100.0
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 2.3e-06 54.3 32 87.5
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 3.0e-06 53.9 36 77.8
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 6.7e-06 52.8 27 100.0
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 6.7e-06 52.8 28 92.9
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 6.7e-06 52.8 28 96.4
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 8.8e-06 52.4 30 90.0


User provided reference genes

Program Settings