Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 5.0e-147 525.0 403 100.0
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 1.3e-131 473.8 402 92.5
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 4.3e-122 442.2 495 71.1
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 1.3e-118 430.6 401 83.5
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.1e-117 427.6 401 81.5
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 3.5e-116 422.5 404 82.2
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.7e-115 420.2 221 93.2
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 3.0e-115 419.5 402 81.3
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.0e-115 419.5 420 74.5
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 3.0e-115 419.5 404 81.4
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 6.6e-115 418.3 407 80.6
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 2.5e-114 416.4 404 87.1
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 4.3e-114 415.6 402 77.9
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.6e-113 413.7 404 83.4
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.8e-113 412.9 411 86.1
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 2.8e-113 412.9 404 82.9
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 4.8e-113 412.1 404 80.2
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.1e-112 411.0 404 83.9
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.1e-112 411.0 404 83.9
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 3.1e-112 409.5 403 78.7
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 4.0e-112 409.1 403 82.4
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.5e-111 407.1 404 79.5
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.8e-111 405.2 404 78.7
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.8e-111 405.2 404 78.5
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.3e-110 404.1 410 82.9
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.7e-110 403.7 415 76.4
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 3.8e-110 402.5 407 86.5
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.4e-109 400.6 403 79.9
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.4e-109 400.6 404 78.7
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.4e-109 400.6 409 83.1
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.9e-109 400.2 221 86.4
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 9.3e-109 397.9 221 85.5
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 2.1e-108 396.7 410 78.3
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 6.0e-108 395.2 409 82.9
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.0e-108 395.2 404 75.7
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 6.0e-108 395.2 404 75.7
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 1.3e-107 394.0 402 79.6
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.0e-107 392.9 222 86.0
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 3.9e-107 392.5 403 80.9
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.1e-106 391.0 407 74.9
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 2.5e-106 389.8 404 79.7
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 9.6e-106 387.9 222 86.0
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.1e-105 386.7 402 81.3
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.1e-105 386.7 402 79.9
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 3.7e-105 386.0 222 84.7
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 4.8e-105 385.6 402 82.1
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.8e-105 385.6 402 80.6
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 4.8e-105 385.6 402 81.3
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 6.2e-105 385.2 403 78.4
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.4e-104 383.3 223 85.2
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.4e-104 383.3 407 81.6
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 3.1e-104 382.9 402 83.1
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 4.0e-104 382.5 403 69.7
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 2.6e-103 379.8 404 80.4
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 1.3e-102 377.5 221 82.8
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 1.3e-102 377.5 221 83.3
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.3e-102 377.5 240 79.2
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.3e-102 377.5 403 81.1
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 2.2e-102 376.7 221 82.8
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 2.9e-102 376.3 221 84.6
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 6.4e-102 375.2 222 82.4
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 4.2e-101 372.5 422 63.5
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 7.1e-101 371.7 403 81.6
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 2.1e-100 370.2 452 72.3
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 2.7e-100 369.8 401 79.3
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 2.7e-100 369.8 403 76.4
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 3.5e-100 369.4 221 81.4
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 6.0e-100 368.6 224 81.7
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.0e-99 367.9 222 79.3
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 3.0e-99 366.3 403 78.4
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.9e-98 363.6 404 76.0
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.9e-98 363.6 221 80.1
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 2.5e-98 363.2 274 69.3
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 7.4e-98 361.7 190 91.1
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 9.6e-98 361.3 222 81.5
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.1e-97 360.1 221 81.0
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 2.1e-97 360.1 221 81.0
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 2.1e-97 360.1 221 81.0
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 2.8e-97 359.8 190 88.4
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 2.8e-97 359.8 215 82.8
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 2.8e-97 359.8 215 82.8
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 3.7e-97 359.4 190 88.4
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 4.8e-97 359.0 219 81.3
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 6.2e-97 358.6 190 88.4
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.4e-96 357.5 408 75.7
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.8e-96 357.1 221 79.6
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.8e-96 357.1 404 78.2
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 2.4e-96 356.7 190 87.9
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 2.4e-96 356.7 190 87.9
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 6.9e-96 355.1 190 87.4
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.5e-95 354.0 190 86.8
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.0e-95 353.6 190 86.8
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 4.5e-95 352.4 190 86.8
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 5.8e-95 352.1 190 87.4
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.5e-93 346.7 213 79.8
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 4.2e-93 345.9 190 85.8
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 3.5e-92 342.8 190 84.7
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.3e-91 340.9 213 77.5
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 3.0e-91 339.7 190 82.6
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 3.9e-91 339.3 191 83.8
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 3.9e-91 339.3 385 70.6
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 5.1e-91 339.0 197 82.7
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 8.7e-91 338.2 190 83.7
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 5.7e-90 335.5 190 81.6
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 6.3e-89 332.0 488 61.9
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.8e-88 330.5 218 74.3
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 1.8e-88 330.5 211 76.3
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.5e-87 327.4 190 81.6
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 2.9e-86 323.2 190 80.5
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.4e-85 320.9 167 89.2
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 3.2e-85 319.7 222 71.2
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 7.2e-85 318.5 406 51.5
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 3.6e-84 316.2 530 57.0
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 3.9e-83 312.8 190 77.4
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 2.2e-81 307.0 222 73.4
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.1e-80 304.7 413 45.0
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 7.7e-71 271.9 190 63.7
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 5.2e-67 259.2 214 65.9
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 8.8e-59 231.9 349 67.3
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 9.1e-56 221.9 185 55.1
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 2.5e-53 213.8 184 55.4
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 4.4e-50 203.0 307 65.1
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 2.4e-48 197.2 223 48.0
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 7.7e-47 192.2 97 90.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 3.6e-44 183.3 126 73.0
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.5e-42 177.9 94 87.2
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 1.3e-25 121.7 88 71.6
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 3.2e-24 117.1 132 51.5
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.3e-22 111.7 70 74.3
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.3e-22 111.7 70 74.3
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 5.4e-16 89.7 60 71.7
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 4.3e-13 80.1 53 62.3
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 9.5e-13 79.0 69 59.4
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 2.0e-10 71.2 42 78.6
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 3.8e-09 67.0 53 66.0
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 2.3e-06 57.8 127 36.2
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 8.7e-06 55.8 27 92.6


User provided reference genes

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