Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 1.4e-156 556.2 280 100.0
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 9.0e-119 430.6 272 80.9
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 4.5e-118 428.3 271 80.4
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 1.2e-115 420.2 271 79.0
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 2.9e-109 399.1 272 73.9
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 5.5e-108 394.8 276 72.5
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 5.1e-106 388.3 272 74.3
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 2.5e-105 386.0 269 70.3
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 2.5e-105 386.0 272 74.3
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 2.8e-104 382.5 271 72.0
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 4.8e-104 381.7 272 70.6
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 1.8e-103 379.8 254 74.8
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 2.4e-103 379.4 271 71.2
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 3.1e-103 379.0 272 70.2
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 3.1e-103 379.0 274 71.2
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 4.0e-103 378.6 272 69.9
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 5.3e-103 378.3 272 71.7
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 5.3e-103 378.3 272 69.9
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 6.9e-103 377.9 254 74.4
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 5.8e-102 374.8 270 68.9
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 7.6e-102 374.4 270 68.9
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.7e-101 373.2 251 74.5
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.2e-101 372.9 275 70.5
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 8.4e-101 370.9 252 73.8
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 8.4e-101 370.9 254 73.2
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 8.4e-101 370.9 256 72.7
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 2.5e-100 369.4 251 73.7
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 2.5e-100 369.4 271 70.1
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.2e-100 368.6 251 73.7
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 4.2e-100 368.6 276 68.1
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.6e-99 366.7 272 67.6
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 7.9e-99 364.4 263 68.4
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 7.9e-99 364.4 296 64.2
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.3e-98 363.6 273 68.1
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 6.7e-98 361.3 273 67.8
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 8.7e-98 360.9 272 67.3
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 1.1e-97 360.5 268 66.4
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 1.5e-97 360.1 274 67.5
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 5.7e-97 358.2 263 68.1
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 7.4e-97 357.8 264 70.8
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 1.3e-96 357.1 269 68.8
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 2.8e-96 355.9 262 69.5
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 2.8e-96 355.9 263 68.1
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 3.7e-96 355.5 273 66.3
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 3.7e-96 355.5 269 68.0
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 4.8e-96 355.1 268 67.2
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 1.1e-95 354.0 249 69.1
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 1.1e-95 354.0 249 69.1
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.1e-95 354.0 249 69.1
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.1e-95 354.0 250 71.6
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 4.1e-95 352.1 267 67.0
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 5.3e-95 351.7 249 68.7
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 5.3e-95 351.7 249 68.7
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 6.9e-95 351.3 249 68.7
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 9.0e-95 350.9 268 66.0
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 9.0e-95 350.9 249 71.1
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 1.5e-94 350.1 266 65.0
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 2.0e-94 349.7 271 63.8
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 7.7e-94 347.8 270 66.3
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 1.7e-93 346.7 268 64.2
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 5.0e-93 345.1 262 66.4
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 5.5e-92 341.7 267 66.7
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 7.2e-92 341.3 250 70.4
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 2.7e-91 339.3 271 63.5
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 4.6e-91 338.6 250 70.0
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 1.8e-90 336.7 242 69.4
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 3.0e-90 335.9 266 62.4
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 6.7e-90 334.7 250 67.6
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 8.8e-90 334.3 272 61.0
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 1.5e-89 333.6 246 64.6
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 5.7e-89 331.6 255 66.3
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 5.7e-89 331.6 275 61.8
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 7.4e-89 331.3 270 62.6
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 7.4e-89 331.3 244 64.8
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.4e-87 327.0 276 62.3
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 6.9e-87 324.7 275 63.6
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.6e-86 322.8 268 61.6
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 7.7e-86 321.2 249 66.3
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.0e-85 320.9 271 60.5
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.3e-85 320.5 268 61.2
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 2.2e-85 319.7 272 62.1
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 3.2e-84 315.8 269 60.2
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 3.2e-84 315.8 257 64.6
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 5.5e-84 315.1 270 59.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 3.6e-83 312.4 223 71.7
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 7.9e-83 311.2 244 63.1
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 3.9e-82 308.9 247 63.6
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 3.9e-82 308.9 257 64.2
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 8.8e-82 307.8 248 60.9
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.8e-79 300.1 218 69.3
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 1.2e-78 297.4 250 58.4
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 1.9e-76 290.0 265 57.7
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 3.2e-76 289.3 277 54.2
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.2e-75 287.3 209 73.7
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 2.4e-71 273.1 235 58.7
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 6.5e-61 238.4 177 65.5
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 2.4e-55 219.9 258 46.9
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 4.5e-54 215.7 249 47.8
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 8.6e-53 211.5 274 43.1
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 9.5e-52 208.0 242 44.6
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 1.6e-51 207.2 169 64.5
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 9.2e-47 191.4 169 59.8
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 5.0e-45 185.7 145 63.4
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 2.1e-43 180.3 267 38.6
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.8e-42 177.2 168 58.3
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.4e-39 167.5 256 39.8
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 4.6e-38 162.5 230 41.7
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 6.8e-34 148.7 240 37.1
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.7e-32 144.1 108 62.0
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.9e-32 143.3 102 67.6
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 2.2e-24 117.1 120 56.7
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 2.3e-21 107.1 148 44.6
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 4.0e-18 96.3 72 61.1
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 1.8e-10 70.9 115 35.7
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 9.0e-10 68.6 116 33.6
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 9.0e-10 68.6 116 33.6
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.5e-09 67.8 116 33.6
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.5e-09 67.8 116 33.6
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.6e-09 67.0 116 32.8
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 2.6e-09 67.0 116 31.9
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 9.9e-09 65.1 116 31.9
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 9.9e-09 65.1 101 34.7
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 2.2e-08 63.9 240 23.8
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.9e-08 63.5 236 23.3
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 2.9e-08 63.5 101 34.7
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 2.9e-08 63.5 101 34.7
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 3.8e-08 63.2 116 32.8
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 6.4e-08 62.4 231 22.5
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 3.2e-07 60.1 115 27.8
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 4.2e-07 59.7 115 30.4
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 3.5e-06 56.6 116 30.2


User provided reference genes

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