Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 2066.2 973 100.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1867.8 973 88.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1831.2 972 86.7
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1735.3 958 83.6
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1733.4 974 82.9
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1729.9 976 81.4
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1727.6 974 82.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1724.1 976 81.6
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1722.2 974 80.4
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1721.1 974 81.4
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1720.3 972 81.6
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1714.9 975 81.1
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1714.1 975 81.0
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1713.4 973 81.3
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1708.7 977 81.3
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1706.4 972 81.0
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1706.0 972 80.3
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1703.7 973 81.2
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1700.6 988 80.1
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1699.5 977 80.8
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1696.0 970 81.3
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1694.9 977 80.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1683.7 977 80.3
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1682.9 975 79.4
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1676.8 977 80.3
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1674.4 975 79.9
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1671.8 973 79.3
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1669.8 971 79.6
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1666.7 971 79.3
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1666.7 974 78.6
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1666.4 952 81.5
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1665.6 969 80.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1665.2 976 78.7
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1660.6 967 79.4
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1659.0 972 78.4
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1650.2 983 77.5
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1649.8 967 79.0
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1642.9 970 78.8
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1634.8 973 77.6
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1634.4 971 76.8
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1631.7 972 77.6
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1630.9 975 77.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1630.2 971 77.7
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1630.2 965 78.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1628.2 970 78.0
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1627.1 965 78.0
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1627.1 974 77.7
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1625.9 970 77.1
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1623.2 968 77.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1622.1 976 77.8
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1622.1 972 77.4
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1620.9 961 78.9
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1620.5 972 77.2
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1619.8 966 77.6
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1617.4 979 77.2
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1615.1 981 76.1
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 974 76.5
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1612.4 924 81.1
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1612.0 975 76.3
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1606.7 974 76.2
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1606.3 986 75.9
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1606.3 962 77.7
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1605.5 975 76.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1604.7 973 76.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1597.8 976 76.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1596.6 957 77.0
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 967 76.7
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1594.7 970 76.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 971 76.6
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1592.4 981 76.0
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 976 76.2
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1587.4 976 75.7
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 975 75.1
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1581.2 975 75.8
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 968 76.1
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1577.0 973 75.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1575.8 971 75.5
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1571.6 979 75.4
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 972 74.5
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 942 77.3
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1557.0 972 74.1
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1556.2 979 75.0
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1550.8 971 73.8
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 971 74.4
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 975 73.6
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1548.5 976 73.5
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1541.6 993 73.6
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1540.0 960 75.6
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 966 74.3
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 970 74.4
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1513.0 878 78.5
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 874 78.4
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 977 72.3
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1503.0 989 70.4
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1498.4 978 70.9
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1497.6 979 73.0
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1491.9 969 70.6
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1491.5 850 80.6
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1486.9 972 71.3
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1486.9 985 71.1
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1478.4 979 71.5
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1478.4 983 71.7
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1473.8 854 78.8
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1473.4 978 71.3
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 978 71.4
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1463.7 978 71.3
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1457.6 978 70.3
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 980 70.8
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 980 70.8
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1452.6 972 71.0
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1447.2 976 71.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1444.9 976 71.0
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1444.1 976 70.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1439.5 976 70.8
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1438.3 979 70.6
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1437.6 977 70.3
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1403.7 1004 65.3
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1382.9 761 82.9
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1364.0 977 68.0
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1360.9 980 66.0
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1340.5 979 67.1
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1325.1 769 79.5
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1315.1 981 65.9
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1298.9 790 76.8
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1277.3 851 70.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1243.4 788 74.4
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1200.7 786 71.2
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1087.0 978 54.5
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.3e-311 1073.2 683 73.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 6.0e-303 1044.3 964 53.3
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 8.9e-291 1003.8 700 69.6
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.2e-287 993.4 971 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 2.2e-273 946.0 961 50.1
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.1e-271 939.5 979 50.1
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.0e-266 922.9 563 76.6
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.5e-234 817.0 842 50.5
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.2e-212 743.4 402 82.6
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.0e-140 505.4 288 80.6
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 4.5e-133 479.9 412 58.7
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.0e-129 468.8 343 66.8
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-115 421.4 369 59.3
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.7e-111 408.3 215 87.9
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 5.7e-96 356.7 192 88.0
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 4.8e-95 353.6 275 64.0
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 6.6e-92 343.2 202 75.2
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.0e-76 291.2 159 82.4
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 5.2e-73 280.4 214 62.6
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.4e-70 271.6 156 76.3
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 6.0e-69 266.9 143 86.0
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 2.6e-64 251.5 653 29.7
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 3.2e-54 218.0 377 38.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 7.8e-53 213.4 149 64.4
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 3.5e-45 188.0 94 88.3
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.3e-42 179.5 829 23.8
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.2e-40 172.9 149 57.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.0e-40 172.2 158 51.3
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 4.2e-38 164.5 118 66.1
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 7.1e-38 163.7 95 82.1
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.2e-37 162.9 148 56.8
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 5.6e-35 154.1 93 73.1
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.3e-34 152.9 121 56.2
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-28 132.9 88 68.2
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-23 115.5 183 37.7
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 3.2e-22 111.7 184 34.8
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.4e-17 95.5 307 27.0
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 2.4e-17 95.5 71 63.4
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.5e-16 92.8 114 46.5
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 3.4e-16 91.7 127 41.7
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.8e-12 79.3 47 76.6
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.3e-10 73.2 76 50.0
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.7e-10 72.8 57 57.9
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.6e-08 65.5 44 65.9
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 3.4e-08 65.1 52 59.6


User provided reference genes

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