Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 2.1e-302 1041.6 540 100.0
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.3e-243 845.5 545 83.9
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 5.7e-239 830.9 545 82.6
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.9e-234 815.8 560 78.9
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 4.9e-230 801.2 505 81.8
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 8.9e-224 780.4 542 76.9
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 9.9e-223 776.9 537 76.2
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 2.4e-221 772.3 536 75.6
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 2.7e-220 768.8 539 76.1
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 3.5e-220 768.5 502 79.5
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 7.8e-220 767.3 538 76.0
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.7e-219 766.1 535 74.8
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.1e-218 763.5 540 73.9
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 1.5e-218 763.1 536 75.4
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.1e-217 759.2 538 74.9
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 8.1e-217 757.3 507 77.5
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 2.4e-216 755.7 507 76.9
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.1e-216 755.4 543 74.6
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 3.1e-216 755.4 499 77.6
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.0e-216 755.0 505 77.0
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.2e-215 753.4 540 73.9
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.4e-215 751.5 505 76.6
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 5.8e-215 751.1 479 78.7
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 5.8e-215 751.1 507 77.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.3e-214 750.0 544 74.8
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.3e-214 750.0 544 74.8
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.7e-214 749.6 489 78.3
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 1.7e-214 749.6 501 77.4
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 2.2e-214 749.2 511 76.3
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 2.2e-214 749.2 563 73.0
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 2.9e-214 748.8 501 80.0
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 3.8e-214 748.4 536 73.9
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 3.8e-214 748.4 538 74.0
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 8.4e-214 747.3 536 73.3
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 8.4e-214 747.3 541 72.5
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 8.4e-214 747.3 514 75.7
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 3.2e-213 745.3 543 72.6
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 3.2e-213 745.3 490 78.4
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 5.4e-213 744.6 549 73.0
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.2e-212 743.4 519 76.5
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.2e-212 743.4 544 74.4
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.7e-212 742.3 429 86.0
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 4.6e-212 741.5 428 85.7
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 4.6e-212 741.5 427 85.7
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 8.6e-211 737.3 544 73.3
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.1e-210 736.9 540 72.6
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.9e-210 736.1 509 75.8
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 7.3e-210 734.2 428 84.8
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.1e-209 732.6 424 85.1
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 2.8e-209 732.3 485 77.1
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 3.6e-209 731.9 425 83.5
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.1e-208 730.3 425 84.9
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 2.4e-208 729.2 506 78.3
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 5.2e-208 728.0 498 76.1
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 6.9e-208 727.6 490 77.6
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 9.0e-208 727.2 425 83.1
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 1.5e-207 726.5 539 71.4
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 2.0e-207 726.1 425 82.4
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 2.0e-207 726.1 425 83.1
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.6e-207 725.7 467 77.5
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 5.8e-207 724.5 426 83.3
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 7.6e-207 724.2 499 76.0
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.7e-206 723.0 498 74.1
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.1e-205 720.3 534 71.3
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 3.2e-205 718.8 487 76.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.5e-204 715.3 487 76.4
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 3.9e-203 711.8 549 70.1
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 1.5e-202 709.9 427 81.5
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.5e-202 709.1 469 77.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 4.3e-202 708.4 529 70.5
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 2.8e-201 705.7 460 76.5
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 4.8e-201 704.9 425 81.6
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 6.2e-201 704.5 429 81.6
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.4e-200 703.4 462 76.4
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.8e-200 703.0 500 72.4
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 4.0e-200 701.8 535 72.3
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 4.0e-200 701.8 445 79.1
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 5.3e-200 701.4 428 81.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.0e-199 699.5 425 81.2
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 2.0e-199 699.5 427 81.7
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.6e-199 699.1 433 81.3
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.5e-199 698.4 428 81.3
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 7.6e-199 697.6 508 72.4
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.3e-198 696.8 534 72.3
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.3e-198 696.8 423 81.1
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 2.9e-198 695.7 532 69.9
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.8e-198 695.3 533 67.9
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 8.4e-198 694.1 427 81.7
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 8.4e-198 694.1 534 71.9
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 1.1e-197 693.7 522 69.9
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.1e-197 693.7 427 80.6
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.4e-197 693.3 529 72.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.9e-197 693.0 534 68.5
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.9e-197 693.0 425 79.5
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 3.2e-197 692.2 530 71.7
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 4.2e-197 691.8 451 76.5
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 4.2e-197 691.8 531 70.2
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 7.1e-197 691.0 426 81.5
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 7.1e-197 691.0 503 74.6
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 2.7e-196 689.1 426 80.5
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 3.5e-196 688.7 517 72.9
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.0e-195 687.2 437 78.7
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.8e-195 686.4 521 69.5
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 7.4e-194 681.0 482 71.0
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.8e-193 679.1 418 79.7
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 3.1e-192 675.6 524 68.5
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.2e-190 669.5 419 77.8
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.1e-188 662.9 398 82.9
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 4.6e-188 661.8 438 76.3
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 5.1e-187 658.3 468 72.4
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.5e-186 656.8 506 68.2
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.3e-186 655.6 469 73.1
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 2.4e-184 649.4 463 70.6
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 2.8e-177 625.9 422 71.8
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 6.9e-176 621.3 502 63.9
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-175 620.5 423 72.1
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 6.1e-172 608.2 369 80.5
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 7.9e-172 607.8 421 70.3
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.1e-170 604.0 512 62.5
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.8e-155 553.5 328 83.2
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.2e-148 530.8 408 72.1
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 3.0e-147 526.2 328 79.9
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.8e-142 509.2 296 84.1
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 4.7e-140 502.3 421 59.9
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 9.8e-138 494.6 395 67.3
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.7e-137 492.7 290 85.2
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 1.8e-136 490.3 291 81.8
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.1e-133 481.1 421 57.7
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.2e-130 471.1 423 57.9
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.0e-126 455.7 290 79.3
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.2e-124 451.1 276 80.4
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 9.2e-120 434.9 426 55.4
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 8.9e-115 418.3 336 66.7
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 9.9e-106 388.3 241 81.3
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.1e-101 374.8 419 46.3
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.2e-90 338.2 430 43.5
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.3e-78 297.4 175 81.1
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 4.9e-73 279.6 370 41.6
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.9e-54 216.9 135 77.0
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.5e-53 214.2 178 64.6
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.6e-45 187.6 182 53.3
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.6e-42 177.6 113 79.6
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 2.9e-41 174.1 120 70.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.4e-40 171.8 131 66.4
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 9.7e-37 159.1 103 75.7
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.1e-35 155.6 90 84.4
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 4.5e-34 150.2 96 72.9
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 8.0e-23 112.8 78 69.2
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 7.5e-21 106.3 153 43.8
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.7e-20 105.1 103 53.4
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.2e-20 104.8 68 72.1
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 6.3e-20 103.2 68 72.1
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.1e-19 102.4 68 72.1
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 2.4e-19 101.3 68 70.6
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.4e-19 101.3 82 67.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-18 99.0 65 70.8
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.7e-17 95.1 258 31.0
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 6.6e-17 93.2 53 83.0
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.9e-16 91.7 149 41.6
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 6.1e-15 86.7 104 48.1
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 6.1e-15 86.7 104 48.1


User provided reference genes

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