Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 0.0e+00 1093.6 580 100.0
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.5e-248 862.1 578 79.8
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 9.2e-243 843.6 614 75.4
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.7e-191 672.2 572 66.1
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.5e-189 666.8 583 61.7
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.4e-185 653.7 581 59.9
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 6.7e-185 651.4 581 61.3
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.9e-179 633.3 580 60.0
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 8.2e-175 617.8 575 60.0
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.0e-173 613.2 586 58.2
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 5.9e-173 611.7 579 59.9
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.1e-171 607.4 581 58.5
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.9e-171 606.7 578 58.8
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 4.2e-171 605.5 560 60.0
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 7.2e-171 604.7 573 59.9
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 9.4e-171 604.4 572 58.7
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 9.4e-171 604.4 576 56.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.7e-170 602.8 577 58.2
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.7e-170 602.8 577 58.2
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.4e-169 600.5 575 57.6
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.8e-169 600.1 568 57.2
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.7e-169 598.2 568 57.7
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.0e-168 596.7 581 57.7
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.0e-168 596.7 583 56.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 3.3e-168 595.9 579 58.2
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 6.3e-167 591.7 599 54.9
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.2e-167 591.3 573 57.6
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 8.2e-167 591.3 580 55.9
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-166 590.9 572 56.3
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.4e-166 590.5 575 57.0
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.4e-166 590.5 581 54.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 3.1e-166 589.3 575 57.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 7.0e-166 588.2 556 59.2
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.3e-164 583.9 577 57.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.6e-162 575.9 587 56.4
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 8.0e-162 574.7 561 56.5
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.3e-161 573.2 585 53.8
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 2.0e-160 570.1 583 54.0
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 7.5e-160 568.2 582 53.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.7e-159 565.8 578 56.1
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.1e-158 564.3 580 55.3
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.8e-158 563.5 580 55.5
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 4.1e-158 562.4 580 54.0
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-157 560.5 585 53.8
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.0e-157 560.1 577 55.5
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.3e-156 557.4 586 52.4
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 3.2e-155 552.7 642 50.6
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.5e-155 552.0 583 53.2
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.2e-155 551.6 583 53.0
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.7e-154 549.7 583 52.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 6.1e-154 548.5 548 53.1
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.0e-153 545.8 583 52.5
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 2.6e-152 543.1 593 51.4
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 8.3e-151 538.1 544 55.0
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.6e-149 533.9 586 52.7
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 4.5e-149 532.3 517 54.2
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 7.7e-149 531.6 576 51.4
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.3e-148 530.8 565 52.0
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 5.0e-148 528.9 584 53.3
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.9e-147 526.9 542 53.3
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 9.5e-147 524.6 581 53.0
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 8.0e-146 521.5 575 51.5
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.6e-144 516.5 582 50.9
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 3.4e-144 516.2 576 52.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.7e-144 515.4 578 50.7
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.4e-142 510.8 587 51.3
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.2e-142 509.6 586 51.4
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 7.0e-142 508.4 554 51.4
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.6e-141 507.3 581 49.7
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.7e-141 506.5 579 49.7
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.8e-141 505.0 580 52.6
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.9e-140 503.1 554 50.9
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 3.9e-140 502.7 548 52.0
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 3.9e-140 502.7 460 60.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 4.3e-139 499.2 544 50.4
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.2e-138 497.7 570 50.7
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.2e-138 497.7 582 49.7
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.3e-135 487.6 583 49.6
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.4e-134 484.2 589 49.1
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.2e-133 481.1 572 48.6
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 3.5e-133 479.6 586 48.6
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 4.6e-133 479.2 556 48.9
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.6e-133 479.2 587 48.9
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.3e-131 473.0 607 49.1
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.3e-131 473.0 459 57.7
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 7.3e-131 471.9 573 48.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 2.1e-130 470.3 584 48.1
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 6.2e-130 468.8 579 48.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 5.2e-129 465.7 584 46.6
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.8e-129 465.3 392 61.5
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 3.7e-127 459.5 599 46.2
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 8.3e-127 458.4 455 57.8
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 9.2e-126 454.9 580 47.9
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 1.2e-125 454.5 580 48.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.2e-125 454.5 580 47.9
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.6e-125 454.1 506 50.4
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 4.6e-125 452.6 537 48.4
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 6.0e-125 452.2 578 45.8
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 7.8e-125 451.8 578 45.8
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-124 450.3 579 46.1
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 2.3e-124 450.3 583 46.1
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 7.3e-123 445.3 575 46.6
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.6e-122 444.1 578 45.0
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.6e-122 444.1 570 46.3
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 2.8e-122 443.4 584 46.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 3.1e-121 439.9 577 44.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 4.4e-120 436.0 578 44.5
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 9.9e-120 434.9 578 44.5
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 9.2e-118 428.3 579 44.0
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 4.6e-117 426.0 580 46.2
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.8e-117 425.2 368 61.4
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.3e-116 423.7 573 45.9
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.5e-115 421.0 459 52.1
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.3e-115 419.5 267 82.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 4.3e-115 419.5 581 44.1
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 4.7e-114 416.0 575 43.7
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.1e-113 414.8 246 86.2
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.1e-113 414.8 468 51.3
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 6.4e-111 405.6 572 44.4
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.4e-110 403.7 457 53.0
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 3.5e-109 399.8 569 43.4
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 6.0e-109 399.1 570 43.9
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 5.1e-108 396.0 468 49.6
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.6e-104 383.6 272 73.2
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 6.0e-101 372.5 471 50.5
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.3e-100 370.5 373 53.9
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.3e-81 306.2 560 36.2
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.4e-78 298.1 565 35.9
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.5e-77 293.5 250 62.8
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.8e-76 291.2 384 41.7
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.0e-71 273.1 439 39.2
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.3e-66 258.5 332 46.4
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.0e-52 212.2 401 35.2
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.0e-51 208.0 371 34.8
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.7e-47 194.9 248 41.5
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.5e-47 192.6 252 44.8
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.1e-45 186.4 161 62.1
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.0e-44 185.7 569 26.7
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-44 185.3 161 62.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.5e-43 181.8 498 29.7
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 2.9e-39 167.5 157 57.3
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-37 161.8 149 54.4
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-36 159.1 164 51.8
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 2.6e-35 154.5 161 46.0
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 3.7e-34 150.6 511 27.2
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 2.4e-33 147.9 503 25.4
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.0e-31 142.5 147 53.1
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 2.5e-30 137.9 553 25.0
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 4.3e-30 137.1 154 46.8
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.3e-30 137.1 210 45.2
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 4.7e-29 133.7 146 45.9
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.0e-29 132.9 121 57.0
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.2e-28 130.2 113 59.3
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 8.9e-28 129.4 535 25.4
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 8.3e-26 122.9 163 42.3
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.7e-24 117.9 221 37.6
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.6e-24 117.1 85 70.6
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.3e-23 115.5 105 58.1
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 2.3e-23 114.8 162 41.4
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 5.0e-23 113.6 150 44.7
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 3.3e-22 110.9 123 50.4
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 3.1e-20 104.4 572 22.9
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 6.8e-20 103.2 92 55.4
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 3.4e-19 100.9 134 39.6
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.3e-18 99.0 123 49.6
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 2.2e-18 98.2 141 39.0
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.4e-17 95.5 73 61.6
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 9.2e-17 92.8 77 59.7
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-16 92.0 84 54.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.7e-15 88.6 77 59.7
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 2.1e-13 81.6 234 29.1
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.8e-13 81.3 111 40.5
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 3.1e-12 77.8 127 39.4
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.8e-12 76.6 62 59.7
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.8e-12 76.6 62 59.7
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 8.3e-10 69.7 111 36.0
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.4e-09 68.9 78 56.4
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 1.4e-09 68.9 92 38.0
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.4e-09 68.2 55 58.2
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 3.9e-07 60.8 85 47.1
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 8.6e-07 59.7 68 44.1


User provided reference genes

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