Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 3832.3 1971 100.0
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 3139.0 1971 81.9
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2978.0 2055 75.7
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2596.2 1983 67.6
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2569.3 1980 67.3
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2525.0 1964 66.5
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2507.6 1981 66.3
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2499.2 1981 65.3
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2493.8 1982 64.9
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2488.0 1975 66.3
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2472.6 1980 64.6
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2465.6 1984 65.0
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2459.9 1965 64.6
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2451.8 1975 65.7
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2435.6 2003 64.0
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2415.2 1976 64.3
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2413.6 1977 64.5
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2410.6 1979 63.8
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2409.8 1978 64.4
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2398.6 1964 63.5
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2385.9 1972 63.2
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 2385.9 2083 61.1
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2373.6 1991 63.0
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 2367.8 1981 63.6
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 2343.5 1970 62.2
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2333.5 2190 58.0
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2332.8 2003 61.9
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2313.9 1980 61.9
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 2306.2 1970 61.6
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2301.6 2059 59.8
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 2299.2 1979 62.3
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2292.7 1976 61.3
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2262.6 2000 60.5
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 2259.6 1981 60.1
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2251.1 2043 59.2
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2239.9 1976 60.2
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2239.9 1780 65.1
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 2186.8 1977 58.9
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 2147.1 1973 57.2
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 2143.6 1969 57.2
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 2139.8 1975 57.4
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 2117.8 2038 56.3
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 2112.8 1970 57.6
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2112.4 1987 58.0
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2107.4 1987 57.6
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 2098.2 1980 56.1
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 2083.5 1981 56.4
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 2078.5 1972 55.8
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 2072.4 1975 56.2
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 2069.7 1976 55.6
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 2062.3 1972 56.1
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 2055.8 1976 55.8
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 2025.0 1979 55.0
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 2023.8 1982 54.9
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 2019.2 1979 55.0
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 2019.2 1982 54.8
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 2006.5 2028 53.8
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 2003.8 1986 53.6
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 2003.4 1975 54.5
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1975.7 2096 52.0
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1974.5 1973 54.4
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1969.9 1971 55.2
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1969.9 1943 54.5
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1962.6 1999 53.6
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1961.4 1376 76.1
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1942.9 2024 52.8
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1926.8 2019 52.4
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1922.9 1978 52.7
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1922.5 1734 58.7
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1915.2 2177 49.3
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1895.2 1976 53.3
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1880.9 1980 51.8
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1869.4 1972 52.1
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1847.8 1986 52.6
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1821.6 1835 53.2
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1678.3 1996 47.5
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1668.3 1384 63.4
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1618.6 1502 59.3
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1573.9 1973 46.9
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1485.3 1261 63.6
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1471.4 1398 57.7
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1366.7 2318 39.8
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1188.3 2009 38.2
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1115.1 1234 51.3
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 9.9e-297 1024.6 1223 48.5
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 3.1e-290 1003.0 2067 32.1
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 2.6e-281 973.4 665 75.8
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.2e-278 964.5 2075 31.6
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.5e-278 963.0 1090 48.5
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 6.5e-272 942.2 1015 50.8
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.2e-263 913.3 779 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.2e-256 890.6 2092 30.9
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.4e-250 871.3 712 64.9
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.7e-248 864.4 590 72.0
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 8.5e-232 808.9 743 56.9
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.0e-213 748.8 737 54.4
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 8.9e-213 745.7 1333 37.1
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.9e-210 738.0 1487 32.8
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 7.1e-194 682.9 845 43.8
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 7.8e-193 679.5 481 71.5
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 4.0e-181 640.6 742 48.2
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 3.1e-173 614.4 792 48.6
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.4e-170 603.6 522 62.5
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 9.3e-170 602.8 716 45.1
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.8e-158 564.7 770 43.9
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 8.2e-142 510.0 417 65.0
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 5.9e-140 503.8 392 67.3
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 3.2e-138 498.0 503 52.7
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 7.4e-135 486.9 2188 23.5
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 4.2e-130 471.1 336 68.2
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 2.3e-120 438.7 608 44.2
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.0e-112 411.4 749 37.7
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 4.7e-105 387.9 660 38.0
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.7e-99 369.4 641 37.0
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 4.4e-79 301.6 232 65.5
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 9.9e-79 300.4 201 72.6
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 9.9e-63 247.3 478 32.2
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 6.0e-60 238.0 207 60.9
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 2.3e-59 236.1 171 69.6
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.8e-54 218.8 139 74.8
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.1e-50 207.2 345 40.6
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.1e-49 203.0 417 33.3
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 9.0e-48 197.6 588 29.4
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 1.0e-46 194.1 133 69.9
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 4.6e-44 185.3 148 56.8
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 6.5e-38 164.9 127 62.2
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 6.1e-36 158.3 100 75.0
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.1e-32 147.5 149 55.0
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 5.3e-32 145.2 148 50.7
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 5.0e-30 138.7 125 53.6
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.1e-29 137.5 93 67.7
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.2e-28 134.0 92 67.4
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.0e-27 129.4 701 24.3
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 8.8e-27 127.9 90 63.3
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 2.0e-26 126.7 99 59.6
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.7e-25 123.6 504 25.0
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.4e-23 115.9 112 53.6
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.8e-22 112.5 91 62.6
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.2e-20 107.5 110 52.7
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 3.6e-20 105.9 157 39.5
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 6.1e-20 105.1 138 46.4
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 2.3e-19 103.2 125 40.8
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 1.1e-18 100.9 146 42.5
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.3e-17 97.4 125 39.2
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 2.2e-17 96.7 71 63.4
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 7.0e-16 91.7 206 33.5
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.2e-15 90.9 146 37.0
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.6e-15 90.5 113 47.8
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 1.6e-15 90.5 78 59.0
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 7.7e-15 88.2 84 53.6
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.7e-14 87.0 59 62.7
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 2.2e-14 86.7 84 53.6
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.9e-13 83.6 64 65.6
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 5.5e-13 82.0 163 33.1
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 2.1e-12 80.1 80 50.0
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.7e-12 79.0 153 37.3
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 4.4e-10 72.4 57 57.9
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 1.7e-09 70.5 68 51.5
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.2e-09 70.1 66 50.0
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 6.3e-09 68.6 106 42.5
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 4.1e-08 65.9 68 54.4
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 4.1e-08 65.9 52 57.7
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 5.3e-08 65.5 43 60.5
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 5.3e-08 65.5 94 47.9
TPR.G30321 Trifolium pratense HOM05D004110 ORTHO05D004810 2.0e-07 63.5 80 50.0
Psat5g096880 Pisum sativum HOM05D020801 ORTHO05D004810 6.5e-06 58.5 43 60.5
Psat5g096920 Pisum sativum HOM05D020801 ORTHO05D004810 6.5e-06 58.5 43 60.5
Psat7g001600 Pisum sativum HOM05D020801 ORTHO05D004810 6.5e-06 58.5 43 60.5


User provided reference genes

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