Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 3.2e-36 154.5 72 100.0
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 3.2e-36 154.5 72 100.0
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 6.0e-35 150.2 72 95.8
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 6.0e-35 150.2 72 95.8
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 95.8
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 7.9e-35 149.8 72 95.8
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 1.3e-34 149.1 71 94.4
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 1.3e-34 149.1 72 94.4
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 1.8e-34 148.7 72 94.4
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 1.8e-34 148.7 71 94.4
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 2.3e-34 148.3 71 94.4
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 2.3e-34 148.3 72 94.4
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 3.0e-34 147.9 72 94.4
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 3.9e-34 147.5 71 93.0
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 3.9e-34 147.5 72 94.4
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 93.1
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 94.4
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 5.1e-34 147.1 72 94.4
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 6.7e-34 146.7 72 93.1
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 8.7e-34 146.4 72 93.1
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 93.1
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 93.1
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 1.1e-33 146.0 72 93.1
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 93.1
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 91.7
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 93.1
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 93.1
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 1.5e-33 145.6 72 93.1
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 1.5e-33 145.6 71 93.0
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 1.5e-33 145.6 71 93.0
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 93.1
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 93.1
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 93.1
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 1.9e-33 145.2 72 91.7
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 2.5e-33 144.8 69 94.2
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 2.5e-33 144.8 69 94.2
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 91.7
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 2.5e-33 144.8 72 93.1
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 93.1
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 91.7
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 3.3e-33 144.4 72 93.1
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 4.3e-33 144.1 69 92.8
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 91.7
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 4.3e-33 144.1 72 91.7
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 93.1
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 5.6e-33 143.7 71 91.5
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 5.6e-33 143.7 71 91.5
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 93.1
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 93.1
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 5.6e-33 143.7 72 91.7
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 7.4e-33 143.3 69 91.3
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 7.4e-33 143.3 72 91.7
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 7.4e-33 143.3 72 91.7
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 7.4e-33 143.3 69 91.3
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 7.4e-33 143.3 72 91.7
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 7.4e-33 143.3 72 91.7
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 9.6e-33 142.9 72 91.7
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.3e-32 142.5 72 91.7
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.3e-32 142.5 72 91.7
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 1.3e-32 142.5 72 91.7
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 1.3e-32 142.5 72 91.7
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 89.9
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 89.9
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 89.9
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 91.3
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 1.6e-32 142.1 69 92.8
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 91.7
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 91.7
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 88.9
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 2.1e-32 141.7 71 90.1
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 90.3
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 2.1e-32 141.7 72 90.3
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 2.8e-32 141.4 69 92.8
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 2.8e-32 141.4 72 91.7
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 3.7e-32 141.0 64 100.0
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 3.7e-32 141.0 69 89.9
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 3.7e-32 141.0 71 91.5
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 4.8e-32 140.6 69 91.3
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 6.2e-32 140.2 69 89.9
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 8.1e-32 139.8 72 88.9
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 8.1e-32 139.8 69 89.9
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.4e-31 138.3 69 88.4
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 3.1e-31 137.9 84 79.8
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 4.0e-31 137.5 63 98.4
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 4.0e-31 137.5 63 98.4
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 5.3e-31 137.1 64 95.3
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 5.3e-31 137.1 64 95.3
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 5.3e-31 137.1 64 95.3
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 9.0e-31 136.3 63 96.8
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 9.0e-31 136.3 64 93.8
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 9.0e-31 136.3 64 93.8
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 9.0e-31 136.3 85 78.8
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 9.0e-31 136.3 63 96.8
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 9.0e-31 136.3 63 96.8
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 1.2e-30 136.0 64 95.3
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 1.5e-30 135.6 64 93.8
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 2.6e-30 134.8 64 93.8
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 2.6e-30 134.8 63 96.8
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 3.4e-30 134.4 64 95.3
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.5e-30 134.0 68 89.7
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.0e-29 132.9 72 87.5
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 1.3e-29 132.5 67 89.6
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.3e-29 132.5 67 91.0
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.3e-29 132.5 67 91.0
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 1.3e-29 132.5 68 85.3
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 1.3e-29 132.5 69 87.0
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 1.3e-29 132.5 64 92.2
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 1.3e-29 132.5 64 92.2
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 2.2e-29 131.7 64 92.2
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 3.8e-29 131.0 69 88.4
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 4.2e-28 127.5 101 63.4
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 4.2e-28 127.5 67 85.1
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 1.6e-27 125.6 71 78.9
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 8.7e-26 119.8 121 52.9
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 8.7e-26 119.8 57 96.5
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.9e-25 118.6 57 94.7
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 2.5e-25 118.2 56 94.6
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 2.1e-24 115.2 59 86.4
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 3.7e-24 114.4 53 94.3
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 3.7e-24 114.4 57 91.2
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 1.4e-23 112.5 72 75.0
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 3.1e-23 111.3 120 51.7
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 3.4e-22 107.8 53 88.7
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 3.4e-22 107.8 53 88.7
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 2.2e-21 105.1 53 84.9
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 3.5e-19 97.8 72 72.2
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 4.3e-17 90.9 42 92.9
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 4.3e-17 90.9 42 92.9
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 4.8e-16 87.4 62 58.1
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 4.8e-16 87.4 63 60.3
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 9.0e-15 83.2 88 52.3
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 9.0e-15 83.2 46 84.8
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 1.9e-12 75.5 33 93.9
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 9.4e-12 73.2 32 93.8
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 9.4e-12 73.2 32 93.8
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 9.4e-12 73.2 32 93.8
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 1.2e-11 72.8 32 93.8
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 1.6e-11 72.4 55 67.3
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 4.6e-11 70.9 32 90.6
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-10 69.7 32 84.4
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.0e-10 68.2 32 96.9
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.0e-10 68.2 32 96.9
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-09 66.2 32 90.6
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 2.0e-09 65.5 40 77.5


User provided reference genes

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