Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.4e-231 805.1 386 100.0
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 3.2e-151 538.9 378 68.0
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 2.1e-150 536.2 376 67.8
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 9.7e-148 527.3 376 65.7
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.2e-141 505.0 371 65.0
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 5.3e-138 495.0 381 64.3
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 2.7e-121 439.5 382 55.5
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 3.3e-119 432.6 359 59.3
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 5.6e-119 431.8 381 57.2
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 8.0e-118 427.9 378 55.3
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 1.8e-117 426.8 380 54.2
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.1e-114 417.5 381 54.3
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 5.4e-114 415.2 363 57.0
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 6.0e-113 411.8 371 56.1
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.0e-112 411.0 378 50.8
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 1.3e-112 410.6 366 55.7
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.3e-112 409.8 358 56.4
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.9e-112 409.1 366 56.0
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 6.6e-112 408.3 372 54.8
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 8.6e-112 407.9 372 52.4
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 7.3e-111 404.8 372 52.7
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 2.1e-110 403.3 366 54.4
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 8.0e-110 401.4 379 52.0
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 8.9e-109 397.9 378 54.8
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 1.2e-108 397.5 365 54.5
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 2.0e-108 396.7 370 51.6
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 2.0e-108 396.7 374 52.1
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.6e-108 396.4 379 51.5
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.3e-107 394.0 364 51.1
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.7e-107 393.7 364 51.4
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 6.4e-107 391.7 362 53.9
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 8.3e-107 391.3 364 50.8
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 1.9e-106 390.2 363 52.9
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.9e-106 390.2 369 49.6
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 3.2e-106 389.4 376 53.5
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 3.2e-106 389.4 363 50.7
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 4.1e-106 389.0 374 49.7
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.2e-105 387.5 367 52.0
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 1.6e-105 387.1 364 49.2
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.3e-104 384.0 361 51.2
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 3.0e-104 382.9 368 53.0
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 5.0e-104 382.1 386 51.0
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 4.3e-103 379.0 356 52.0
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 7.3e-103 378.3 379 49.6
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 7.3e-103 378.3 370 51.1
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 9.5e-103 377.9 376 49.7
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 1.6e-102 377.1 376 50.5
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 2.1e-102 376.7 364 50.5
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 2.1e-102 376.7 363 49.3
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 4.7e-102 375.6 375 49.6
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 6.2e-102 375.2 369 50.4
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 2.6e-100 369.8 362 49.7
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.7e-99 365.9 367 48.8
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 1.9e-98 363.6 370 50.0
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 2.4e-98 363.2 363 49.6
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 3.2e-98 362.8 364 49.7
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 3.2e-98 362.8 379 49.1
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.1e-98 362.5 384 47.9
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 4.1e-98 362.5 366 50.0
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 7.1e-98 361.7 372 47.8
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 3.5e-97 359.4 365 49.3
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 4.6e-97 359.0 367 49.0
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 6.0e-97 358.6 371 50.4
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 6.0e-97 358.6 352 50.6
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 1.0e-96 357.8 364 49.5
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.9e-96 355.9 375 47.5
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 6.6e-96 355.1 376 47.3
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 6.6e-96 355.1 371 46.9
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 6.6e-96 355.1 399 46.9
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 1.1e-95 354.4 370 49.7
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.5e-95 354.0 371 50.9
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 2.5e-95 353.2 372 48.7
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 2.8e-94 349.7 377 50.4
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 5.2e-93 345.5 367 49.0
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 6.8e-93 345.1 374 47.1
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 6.8e-93 345.1 398 46.2
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 1.5e-92 344.0 370 49.5
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.2e-91 340.1 360 48.1
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 2.4e-90 336.7 369 47.4
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 2.4e-90 336.7 372 47.3
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-89 334.0 314 51.3
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 2.1e-89 333.6 361 46.5
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 7.8e-89 331.6 366 49.2
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 3.9e-88 329.3 376 47.9
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 5.1e-88 328.9 374 46.5
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.1e-87 327.8 391 43.5
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 1.1e-87 327.8 387 44.4
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.9e-87 327.0 371 46.6
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 5.6e-87 325.5 376 47.1
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 6.2e-86 322.0 391 46.8
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.8e-85 320.5 379 46.2
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 2.6e-84 316.6 378 43.7
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 3.4e-84 316.2 384 42.4
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 5.8e-84 315.5 384 42.2
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 5.8e-84 315.5 384 42.2
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 2.9e-83 313.2 257 57.6
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 4.9e-83 312.4 373 44.2
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 1.4e-82 310.8 378 44.2
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 5.4e-82 308.9 267 52.8
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 1.3e-80 304.3 378 43.7
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 3.0e-80 303.1 385 42.3
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.9e-80 302.8 374 45.2
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 5.1e-80 302.4 362 44.2
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 8.7e-80 301.6 369 42.0
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.9e-79 300.4 270 52.2
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 1.9e-79 300.4 385 45.7
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 9.6e-79 298.1 384 40.1
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 1.6e-78 297.4 393 39.9
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 6.2e-78 295.4 387 42.6
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 1.4e-77 294.3 389 42.7
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 4.0e-77 292.7 386 42.2
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 5.3e-77 292.4 386 42.2
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 6.9e-77 292.0 369 42.8
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 2.0e-76 290.4 372 40.9
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 7.6e-76 288.5 368 43.2
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 1.3e-75 287.7 385 41.3
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 3.2e-74 283.1 381 40.7
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.6e-73 280.8 369 40.9
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.3e-72 276.9 246 55.3
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 8.7e-72 275.0 372 40.9
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 2.8e-70 270.0 358 42.2
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 7.6e-68 261.9 290 44.8
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 7.6e-68 261.9 268 44.0
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 9.9e-68 261.5 363 41.6
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.8e-67 259.6 228 55.3
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.3e-64 251.1 288 44.4
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 2.8e-62 243.4 314 38.2
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.0e-60 237.3 228 49.1
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.1e-58 231.5 254 46.5
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 1.4e-58 231.1 363 35.5
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 7.9e-49 198.7 211 45.0
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 2.5e-47 193.7 184 53.3
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 3.1e-45 186.8 188 48.9
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.2e-44 184.9 208 45.2
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.5e-44 184.5 130 68.5
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 6.3e-38 162.5 364 32.1
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 9.1e-37 158.7 199 43.7
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.8e-32 144.4 392 30.1
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 3.0e-32 143.7 405 29.6
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 1.3e-27 128.3 157 43.9
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 7.2e-26 122.5 396 27.0
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 4.7e-25 119.8 382 26.7
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 4.7e-25 119.8 376 27.9
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.2e-23 115.2 370 24.9
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 1.5e-23 114.8 362 25.4
CSS0040524 Camellia sinensis var. sinensis HOM05D007853 ORTHO05D009873 2.0e-23 114.4 368 26.4
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 2.0e-23 114.4 379 26.4
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 7.0e-21 105.9 373 25.7
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.2e-20 105.1 257 30.7
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 1.2e-20 105.1 370 25.4
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 2.0e-20 104.4 114 46.5
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.5e-20 103.6 230 32.6
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.5e-20 103.2 387 24.5
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 1.0e-19 102.1 389 24.2
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 1.0e-19 102.1 371 25.1
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 6.5e-19 99.4 375 25.6
PGR044G1509 Punica granatum HOM05D007853 ORTHO05D009873 6.5e-19 99.4 393 25.7
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 1.1e-18 98.6 303 26.7
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.5e-18 98.2 369 24.4
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 2.5e-18 97.4 78 53.8
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 5.5e-18 96.3 374 24.3
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 1.6e-17 94.7 390 24.4
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 3.6e-17 93.6 395 26.3
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 6.1e-17 92.8 358 26.0
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 8.0e-17 92.4 371 23.7
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 4.0e-16 90.1 91 47.3
CiPaw.11G008800 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.2e-15 88.6 52 78.8
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 6.3e-14 82.8 98 44.9
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 1.3e-11 75.1 101 39.6
unitig_8.g2925 Utricularia gibba HOM05D004907 ORTHO05D005707 8.6e-11 72.4 93 40.9
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 4.0e-08 63.5 101 37.6
Pp3c3_33090 Physcomitrium patens HOM05D030659 ORTHO05D009385 4.0e-08 63.5 184 27.7
Actinidia08148 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.5e-07 61.6 55 47.3
Mapoly0098s0011 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.2e-06 57.8 326 23.6
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 2.8e-06 57.4 317 22.4
Psat4g158360 Pisum sativum HOM05D003005 ORTHO05D004170 6.3e-06 56.2 98 36.7


User provided reference genes

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