Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 1.4e-86 322.8 152 100.0
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 5.3e-65 251.1 162 74.7
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 3.6e-61 238.4 193 64.2
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 1.4e-57 226.5 163 63.8
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 7.7e-56 220.7 166 65.1
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 3.8e-55 218.4 162 70.4
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 4.2e-54 214.9 166 64.5
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 2.1e-53 212.6 166 61.4
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 7.9e-53 210.7 162 65.4
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 2.3e-52 209.1 164 63.4
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 3.0e-52 208.8 167 61.7
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 3.0e-52 208.8 162 61.1
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 5.1e-52 208.0 164 65.2
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 6.7e-52 207.6 166 62.7
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 1.5e-51 206.5 166 62.7
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 7.4e-51 204.1 164 63.4
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 7.4e-51 204.1 163 58.9
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 7.4e-51 204.1 161 62.7
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 1.7e-50 203.0 157 63.1
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 8.2e-50 200.7 164 63.4
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 1.1e-49 200.3 163 60.1
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 6.9e-49 197.6 163 63.8
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 2.0e-48 196.1 166 60.8
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 3.4e-48 195.3 162 60.5
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 5.9e-48 194.5 164 61.0
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 5.9e-48 194.5 164 61.0
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 1.4e-46 189.9 164 61.6
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 4.2e-46 188.3 160 60.6
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 5.5e-46 188.0 134 70.1
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 9.4e-46 187.2 153 60.8
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.2e-45 186.8 162 58.6
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 2.7e-45 185.7 162 56.8
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 1.8e-44 183.0 162 58.6
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 2.3e-44 182.6 164 57.9
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 3.0e-44 182.2 162 59.9
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 3.0e-44 182.2 164 57.9
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 6.7e-44 181.0 164 57.3
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 2.6e-43 179.1 166 57.8
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 4.4e-43 178.3 163 55.8
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.3e-42 176.8 164 56.7
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 1.3e-42 176.8 168 56.0
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 2.2e-42 176.0 162 57.4
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 2.8e-42 175.6 162 54.9
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 4.8e-42 174.9 162 54.3
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 9.1e-41 170.6 162 53.1
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 9.1e-41 170.6 162 53.1
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 1.2e-40 170.2 164 52.4
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 1.2e-40 170.2 162 52.5
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 1.6e-40 169.9 162 53.1
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 2.6e-40 169.1 166 54.8
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 1.0e-39 167.2 139 61.2
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 8.5e-39 164.1 162 53.1
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 1.1e-38 163.7 131 60.3
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.2e-37 160.2 162 51.2
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 6.1e-37 157.9 155 54.2
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 8.0e-37 157.5 133 58.6
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 1.0e-36 157.1 156 51.3
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 6.7e-36 154.5 176 46.0
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 1.5e-35 153.3 142 54.9
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 2.0e-35 152.9 137 60.6
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 4.4e-35 151.8 187 48.1
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 1.1e-33 147.1 144 52.8
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 1.4e-33 146.7 156 48.7
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 7.7e-32 141.0 164 46.3
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 1.5e-30 136.7 162 46.9
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 4.7e-29 131.7 130 55.4
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 8.0e-29 131.0 137 48.9
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.0e-28 130.6 168 44.6
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 1.2e-27 127.1 131 54.2
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 5.7e-27 124.8 130 49.2
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 6.3e-26 121.3 70 74.3
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 7.0e-25 117.9 152 46.1
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 1.2e-21 107.1 120 49.2
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 2.8e-21 105.9 110 49.1
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 5.2e-20 101.7 94 48.9
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 1.7e-18 96.7 69 56.5
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 2.4e-17 92.8 164 33.5
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 1.2e-16 90.5 83 61.4
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 3.8e-15 85.5 83 53.0


User provided reference genes

Program Settings