Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 4.0e-38 161.0 85 100.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 4.2e-35 151.0 81 97.5
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 9.3e-35 149.8 80 97.5
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.1e-34 148.7 81 96.3
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.8e-33 145.6 81 92.6
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.8e-33 145.6 85 88.2
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.8e-33 145.6 85 88.2
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 1.8e-33 145.6 83 91.6
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 3.0e-33 144.8 81 92.6
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 6.7e-33 143.7 81 90.1
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 6.7e-33 143.7 81 91.4
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.5e-32 142.5 81 88.9
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 4.3e-32 141.0 82 89.0
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 4.3e-32 141.0 81 88.9
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 5.6e-32 140.6 81 88.9
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.4e-32 140.2 81 90.1
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.4e-32 140.2 81 90.1
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.4e-32 140.2 81 90.1
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 7.4e-32 140.2 82 89.0
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 9.6e-32 139.8 81 88.9
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.3e-31 139.4 81 87.7
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 3.7e-31 137.9 81 86.4
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 3.7e-31 137.9 81 87.7
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 4.8e-31 137.5 83 85.5
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 4.8e-31 137.5 81 87.7
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.1e-30 136.3 82 86.6
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.1e-30 136.3 81 87.7
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.4e-30 136.0 81 86.4
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.0e-30 134.4 81 86.4
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 4.0e-30 134.4 81 86.4
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 5.3e-30 134.0 81 86.4
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 9.0e-30 133.3 81 86.4
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 9.0e-30 133.3 81 86.4
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 9.0e-30 133.3 82 80.5
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 9.0e-30 133.3 81 85.2
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.2e-29 132.9 81 86.4
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.5e-29 132.5 81 84.0
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.5e-29 132.5 81 84.0
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 1.5e-29 132.5 81 84.0
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.5e-29 132.5 78 85.9
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.5e-29 132.5 79 83.5
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.0e-29 132.1 76 86.8
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 2.0e-29 132.1 78 84.6
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.6e-29 131.7 82 82.9
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.6e-29 131.7 79 84.8
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 2.6e-29 131.7 83 78.3
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 2.6e-29 131.7 81 84.0
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 3.4e-29 131.3 85 82.4
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 3.4e-29 131.3 79 84.8
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.5e-29 131.0 82 82.9
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 4.5e-29 131.0 81 84.0
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 5.8e-29 130.6 80 86.2
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 7.6e-29 130.2 80 83.8
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 7.6e-29 130.2 77 84.4
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 7.6e-29 130.2 78 84.6
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 7.6e-29 130.2 81 80.2
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 9.9e-29 129.8 81 84.0
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 9.9e-29 129.8 81 81.5
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 9.9e-29 129.8 79 83.5
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.7e-28 129.0 78 83.3
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.7e-28 129.0 81 84.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.7e-28 129.0 81 84.0
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 2.2e-28 128.6 81 82.7
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.9e-28 128.3 81 80.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.8e-28 127.9 81 79.0
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 3.8e-28 127.9 80 81.2
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 3.8e-28 127.9 80 85.0
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 4.9e-28 127.5 81 81.5
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 6.4e-28 127.1 79 82.3
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 6.4e-28 127.1 73 89.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 6.4e-28 127.1 77 83.1
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 8.4e-28 126.7 81 80.2
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.1e-27 126.3 82 81.7
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.1e-27 126.3 81 79.0
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 1.4e-27 125.9 76 84.2
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.9e-27 125.6 80 82.5
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.9e-27 125.6 81 77.8
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.4e-27 125.2 81 81.5
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 2.4e-27 125.2 78 82.1
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.2e-27 124.8 75 86.7
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 3.2e-27 124.8 79 83.5
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 3.2e-27 124.8 81 79.0
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 3.2e-27 124.8 81 79.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 4.2e-27 124.4 81 79.0
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 4.2e-27 124.4 76 82.9
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 7.1e-27 123.6 79 82.3
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 7.1e-27 123.6 79 82.3
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 9.3e-27 123.2 78 83.3
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 9.3e-27 123.2 79 82.3
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.2e-26 122.9 75 81.3
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 2.1e-26 122.1 81 75.3
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 2.7e-26 121.7 82 75.6
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 3.5e-26 121.3 74 85.1
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.0e-25 119.8 74 83.8
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.3e-25 119.4 81 76.5
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.8e-25 119.0 81 77.8
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.3e-25 118.6 74 82.4
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 5.1e-25 117.5 76 78.9
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 6.7e-25 117.1 82 75.6
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 6.7e-25 117.1 80 80.0
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 8.7e-25 116.7 76 76.3
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.5e-24 115.9 79 73.4
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.5e-24 115.9 78 80.8
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.9e-24 115.5 75 80.0
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 1.9e-24 115.5 76 75.0
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 1.9e-24 115.5 75 77.3
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.9e-24 115.5 76 75.0
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.5e-24 115.2 76 75.0
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.3e-24 114.8 78 73.1
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 4.3e-24 114.4 76 75.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 5.6e-24 114.0 74 78.4
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 5.6e-24 114.0 76 73.7
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 7.4e-24 113.6 75 78.7
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 7.4e-24 113.6 75 76.0
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 7.4e-24 113.6 75 76.0
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 1.3e-23 112.8 76 72.4
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-23 112.8 76 72.4
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 1.3e-23 112.8 76 72.4
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.6e-23 112.5 75 74.7
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 2.1e-23 112.1 75 74.7
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-23 112.1 75 74.7
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 2.1e-23 112.1 75 74.7
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.8e-23 111.7 76 71.1
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-23 111.7 76 71.1
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-23 111.7 76 71.1
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.8e-23 111.7 76 71.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.6e-21 105.1 73 75.3
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 2.6e-21 105.1 78 66.7
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 4.5e-21 104.4 73 71.2
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 4.5e-21 104.4 73 71.2
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 4.5e-21 104.4 73 71.2
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 2.1e-18 95.5 74 66.2
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 2.1e-18 95.5 74 67.6
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.9e-17 91.3 76 64.5
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 6.7e-17 90.5 74 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.1e-16 89.7 75 64.0
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.3e-15 86.3 49 87.8
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.7e-15 84.7 71 63.4
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.7e-15 84.7 71 63.4
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.2e-13 79.7 76 60.5
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.2e-13 79.7 51 78.4
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.3e-12 76.3 51 70.6
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.2e-12 75.5 43 86.0
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 4.6e-10 67.8 72 51.4
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 5.1e-09 64.3 40 80.0


User provided reference genes

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