Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.7e-145 519.2 254 100.0
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.3e-137 492.3 254 93.3
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 2.3e-137 492.3 254 93.7
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 3.0e-137 491.9 254 93.3
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 2.4e-134 482.3 255 91.8
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 9.0e-134 480.3 255 91.0
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 4.4e-133 478.0 255 91.0
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 89.0
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 2.4e-131 472.2 255 90.6
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 7.1e-131 470.7 255 90.2
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 9.3e-131 470.3 254 89.8
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.2e-130 469.9 255 89.0
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 1.2e-130 469.9 254 89.8
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.6e-130 469.5 253 90.5
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 3.5e-130 468.4 255 89.4
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 7.9e-130 467.2 255 89.4
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 88.2
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 87.5
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 87.5
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.7e-129 466.1 254 89.8
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.7e-129 466.1 255 87.1
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 3.0e-129 465.3 254 88.6
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 88.2
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 89.4
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 88.2
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.5e-128 463.0 254 88.6
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 5.6e-128 461.1 254 88.2
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 87.5
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 88.2
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 9.6e-128 460.3 255 87.8
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.3e-127 459.9 255 87.5
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.3e-127 459.9 253 88.1
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 87.5
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 1.6e-127 459.5 254 87.4
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 2.1e-127 459.1 254 88.2
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 4.8e-127 458.0 255 87.5
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 4.8e-127 458.0 255 87.1
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 4.8e-127 458.0 255 87.8
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 4.8e-127 458.0 254 87.4
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 6.2e-127 457.6 254 87.4
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 6.2e-127 457.6 255 88.2
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 8.1e-127 457.2 254 87.4
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 1.4e-126 456.4 254 87.4
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 1.4e-126 456.4 255 87.1
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.8e-126 456.1 254 87.0
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.8e-126 456.1 256 87.1
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 3.1e-126 455.3 256 85.5
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 5.3e-126 454.5 254 86.6
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 6.9e-126 454.1 254 86.6
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 6.9e-126 454.1 254 86.6
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 6.9e-126 454.1 256 86.3
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 9.0e-126 453.8 254 86.6
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 1.2e-125 453.4 254 86.6
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.2e-125 453.4 254 86.6
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 1.5e-125 453.0 254 86.2
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 2.0e-125 452.6 254 85.8
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 2.0e-125 452.6 255 86.7
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 2.0e-125 452.6 256 86.3
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 2.0e-125 452.6 256 86.3
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 2.6e-125 452.2 257 86.0
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.5
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.5
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.5
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 85.9
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 85.9
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 3.8e-124 448.4 261 84.7
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 4.9e-124 448.0 253 85.8
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 6.4e-124 447.6 256 85.9
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 8.4e-124 447.2 255 83.9
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 8.4e-124 447.2 255 85.1
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.1e-123 446.8 256 85.2
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.1e-123 446.8 256 85.5
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 1.4e-123 446.4 256 85.2
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 1.9e-123 446.0 256 85.5
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 2.4e-123 445.7 256 84.4
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 7.1e-123 444.1 255 84.7
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 1.2e-122 443.4 253 85.4
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.2e-122 443.4 253 85.8
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.2e-122 443.4 253 85.8
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.6e-122 443.0 256 85.2
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 3.5e-122 441.8 256 84.8
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 7.9e-122 440.7 257 84.4
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.0e-121 440.3 256 84.0
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.8e-121 439.5 257 83.3
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 1.8e-121 439.5 255 83.5
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 2.3e-121 439.1 256 84.0
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 2.3e-121 439.1 253 85.0
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 3.0e-121 438.7 253 85.4
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 5.1e-121 438.0 257 82.1
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.7e-121 437.2 255 83.5
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 1.1e-120 436.8 254 83.9
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.1e-120 436.8 306 73.9
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 1.5e-120 436.4 255 84.3
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 5.6e-120 434.5 254 84.6
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 5.6e-120 434.5 254 83.1
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 1.6e-119 433.0 253 84.2
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.6e-119 433.0 255 83.1
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 3.7e-119 431.8 253 83.8
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.7e-119 431.8 257 82.9
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 4.8e-119 431.4 254 81.9
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 8.1e-119 430.6 257 80.9
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.4e-118 429.9 251 84.5
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.4e-118 429.9 251 84.5
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 2.4e-118 429.1 254 82.7
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 3.1e-118 428.7 254 83.1
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.2e-117 426.8 253 82.2
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 4.5e-117 424.9 239 87.4
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 7.6e-117 424.1 239 86.6
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.7e-116 422.9 253 80.6
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 3.8e-116 421.8 282 74.5
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.2e-114 416.8 270 74.8
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.5e-112 409.8 294 72.4
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 8.2e-111 404.1 233 80.7
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 3.1e-110 402.1 219 89.0
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 2.0e-109 399.4 260 78.5
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 2.9e-108 395.6 230 81.3
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 3.8e-108 395.2 254 79.5
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 9.3e-107 390.6 259 76.8
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 4.6e-106 388.3 229 79.5
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 8.2e-103 377.5 242 73.1
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 5.3e-102 374.8 232 78.4
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 9.0e-102 374.0 251 70.5
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 1.7e-100 369.8 319 63.3
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.9e-100 369.0 240 73.8
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 8.5e-100 367.5 232 78.0
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 1.1e-99 367.1 232 75.0
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.9e-99 366.3 255 73.3
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.8e-97 359.8 239 77.0
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 3.9e-97 358.6 199 84.4
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 9.7e-96 354.0 257 66.9
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 5.3e-94 348.2 257 66.1
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 3.1e-86 322.4 250 68.0
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 9.1e-86 320.9 160 93.8
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 4.2e-83 312.0 161 93.2
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 1.8e-81 306.6 248 60.9
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 8.2e-79 297.7 162 85.8
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.7e-76 290.0 170 83.5
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 8.5e-76 287.7 284 58.5
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.2e-74 283.9 158 86.1
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 2.7e-74 282.7 201 71.1
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.3e-71 273.9 232 52.2
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.3e-71 273.9 162 83.3
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 7.2e-67 258.1 267 55.4
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 2.0e-56 223.4 117 90.6
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 2.6e-56 223.0 135 80.0
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.8e-54 216.9 115 90.4
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.6e-50 203.8 192 50.0
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 2.2e-47 193.4 101 92.1
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 3.7e-47 192.6 121 78.5
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 4.6e-45 185.7 100 89.0
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 6.6e-44 181.8 165 61.2
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 2.3e-41 173.3 234 43.6
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 6.0e-37 158.7 89 83.1
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.7e-36 157.1 100 78.0
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.7e-36 157.1 83 85.5
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 6.6e-36 155.2 84 83.3
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 8.6e-36 154.8 83 86.7
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.2e-34 151.0 89 79.8
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.8e-34 149.8 89 78.7
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.0e-33 146.0 89 77.5
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 6.8e-33 145.2 75 88.0
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 1.7e-31 140.6 97 76.3
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.9e-31 139.8 81 81.5
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.9e-31 139.0 81 81.5
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.2e-29 134.4 75 82.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.2e-29 134.4 75 82.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.2e-29 134.4 75 82.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.2e-29 134.4 75 82.7
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.1e-29 133.7 81 77.8
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 4.6e-29 132.5 75 81.3
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 2.3e-28 130.2 84 76.2
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.5e-27 127.5 75 78.7
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.6e-26 122.9 76 77.6
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.1e-26 121.7 71 80.3
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 2.4e-25 120.2 82 74.4
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.3e-10 71.2 39 87.2
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.3e-10 71.2 55 70.9
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 4.2e-06 56.2 30 86.7


User provided reference genes

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