Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1759.6 850 100.0
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1501.1 852 84.4
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1481.1 852 82.9
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1385.2 852 77.2
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1359.4 850 76.5
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1349.7 853 75.5
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1344.7 850 75.2
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1332.4 849 73.6
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1327.0 850 74.4
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1326.6 851 73.6
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1325.5 852 73.9
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1325.1 852 74.4
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1323.9 809 78.9
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1323.9 848 74.2
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1321.2 886 72.2
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1317.8 851 73.2
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1313.5 851 73.3
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1311.6 851 73.2
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1309.7 881 71.4
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1306.2 851 73.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1303.1 855 71.8
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1303.1 847 73.1
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1302.7 851 72.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1300.4 856 72.3
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1299.3 851 71.9
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1297.3 824 75.5
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1293.1 851 71.6
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1279.6 850 72.1
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1275.0 852 71.8
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1274.2 851 71.3
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1271.5 972 64.8
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1268.8 852 70.9
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1268.4 863 70.0
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1268.1 852 70.4
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1266.9 853 70.6
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1266.1 852 70.4
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1264.6 853 70.6
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1263.1 853 70.5
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1263.1 852 71.2
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1261.5 811 74.0
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1260.7 853 70.9
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1259.2 854 71.1
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1258.4 852 70.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1257.3 857 69.5
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1253.0 868 68.8
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1251.1 850 70.2
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1250.3 853 70.6
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1250.0 852 70.3
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1249.2 852 69.7
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1246.9 860 69.7
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1244.2 852 70.4
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1241.5 853 70.0
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1240.7 852 69.2
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1239.2 850 70.7
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1236.5 853 69.9
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1229.2 865 69.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1228.8 852 69.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1228.8 853 69.1
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1218.4 876 67.1
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1216.1 845 69.5
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1215.3 854 68.3
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1211.1 855 68.1
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1208.4 857 67.3
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1199.1 857 66.9
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1199.1 853 68.2
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1197.2 850 67.8
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1195.3 852 67.7
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 850 66.0
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1184.9 850 66.8
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1182.5 849 67.6
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 852 64.9
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 852 64.4
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1171.4 854 65.1
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1166.8 850 66.1
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1161.0 854 64.9
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1160.6 845 65.9
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1159.8 855 65.1
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1156.7 886 62.8
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1154.8 856 65.0
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 856 64.7
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1144.0 752 70.6
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1142.1 870 62.6
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1139.0 871 63.3
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1137.5 889 61.9
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1135.9 766 72.3
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1133.2 850 64.8
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1133.2 850 64.0
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1131.3 846 64.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1127.9 829 65.4
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 0.0e+00 1127.9 858 63.5
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1121.3 857 63.5
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1119.0 727 72.6
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1110.1 880 62.5
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1095.5 840 63.0
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 820 62.1
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 0.0e+00 1078.5 718 70.6
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1075.8 773 64.7
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 0.0e+00 1075.5 775 63.6
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 5.8e-312 1073.5 777 65.9
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.4e-310 1067.8 778 64.0
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 9.8e-310 1066.6 850 62.1
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.7e-309 1065.8 769 64.2
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 2.8e-309 1065.1 859 61.2
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.0e-306 1056.6 771 63.2
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 5.0e-306 1054.3 779 62.3
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 8.6e-306 1053.5 852 60.7
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-304 1049.7 780 62.9
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 5.2e-303 1044.3 779 62.8
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 9.8e-302 1040.0 913 56.7
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 8.3e-301 1036.9 781 62.4
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 4.1e-300 1034.6 804 60.8
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.7e-298 1029.2 805 60.9
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 5.6e-297 1024.2 783 61.8
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 5.2e-295 1017.7 780 61.7
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 8.1e-288 993.8 731 63.5
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 9.9e-286 986.9 598 81.1
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.4e-279 965.7 804 58.3
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.5e-278 963.0 857 56.7
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 4.8e-264 914.8 649 68.4
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 2.1e-256 889.4 857 52.0
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 7.9e-251 870.9 795 54.6
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.9e-251 870.9 777 55.3
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 4.2e-244 848.6 823 50.8
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.4e-239 832.8 776 51.2
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.1e-231 805.4 627 62.5
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 6.9e-231 804.7 794 50.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 5.9e-222 775.0 654 61.0
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 7.7e-222 774.6 780 51.4
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 6.5e-213 745.0 471 71.8
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.2e-212 742.7 433 77.1
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.1e-204 717.6 432 75.5
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.0e-197 694.5 735 47.5
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 2.6e-193 679.9 429 72.5
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.7e-184 650.6 482 65.8
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 1.4e-183 647.5 658 53.0
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.9e-183 647.1 537 60.3
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.1e-180 637.9 589 54.8
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 4.9e-176 622.5 777 48.0
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 6.2e-171 605.5 865 40.1
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.5e-161 574.3 574 54.2
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 3.6e-147 526.6 271 89.7
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.7e-144 517.7 441 60.1
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.1e-143 515.0 320 73.1
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 3.7e-139 500.0 406 61.3
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.0e-117 427.2 333 63.4
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 4.4e-116 423.3 394 58.1
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 4.2e-111 406.8 405 52.8
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 6.3e-107 392.9 399 56.1
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.6e-94 351.7 242 66.9
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 2.1e-86 324.7 813 31.5
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 8.0e-86 322.8 528 36.2
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.2e-73 282.3 209 64.1
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 6.0e-73 280.0 202 64.4
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.5e-57 227.6 138 75.4
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.0e-52 211.8 166 59.6
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 8.4e-51 206.5 101 87.1
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 6.2e-46 190.3 100 84.0
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.0e-44 185.3 193 49.7
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 4.6e-33 147.5 95 70.5
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 4.8e-30 137.5 148 46.6
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 9.9e-28 129.8 86 69.8
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 2.2e-27 128.6 126 54.0
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.0e-24 119.8 69 76.8
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 9.0e-21 106.7 84 60.7
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 7.6e-20 103.6 96 58.3
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 7.6e-20 103.6 83 59.0
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.5e-18 98.6 61 72.1
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 4.6e-17 94.4 81 54.3
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.6e-14 85.9 45 84.4
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 9.0e-13 80.1 59 62.7
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 9.0e-13 80.1 37 86.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.0e-12 79.0 77 50.6
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.6e-12 78.6 49 75.5
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 5.0e-11 74.3 68 57.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.4e-08 66.2 91 41.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.8e-08 65.9 90 42.2


User provided reference genes

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