Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 3.0e-276 954.5 470 100.0
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 7.8e-224 780.4 465 82.8
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 3.4e-219 765.0 465 80.6
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 1.0e-215 753.4 458 80.8
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 7.8e-200 700.7 466 73.4
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 1.7e-191 672.9 467 70.9
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 3.9e-191 671.8 433 75.5
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 8.7e-191 670.6 464 72.2
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 8.7e-191 670.6 462 71.4
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 1.9e-190 669.5 465 71.8
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 4.3e-190 668.3 465 71.2
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.8e-188 662.9 456 71.9
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 5.2e-188 661.4 456 71.7
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 4.4e-187 658.3 468 67.9
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 2.9e-186 655.6 443 72.2
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 1.9e-185 652.9 440 71.6
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 4.2e-185 651.7 433 73.9
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 8.7e-183 644.0 464 70.0
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 2.5e-182 642.5 469 68.0
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.6e-182 641.3 473 67.9
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 1.3e-181 640.2 441 71.4
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 1.6e-181 639.8 466 68.7
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.1e-181 639.4 464 69.2
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 4.0e-180 635.2 441 71.0
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.4e-179 632.1 441 70.5
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 6.0e-176 621.3 464 65.3
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 7.9e-176 620.9 464 65.5
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 1.3e-175 620.2 466 64.6
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 1.8e-175 619.8 464 65.3
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 2.3e-175 619.4 459 66.0
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 3.0e-175 619.0 465 65.2
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 8.7e-175 617.5 443 69.3
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 1.9e-174 616.3 464 65.1
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 4.8e-173 611.7 434 68.9
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 8.1e-173 610.9 429 69.7
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 5.3e-172 608.2 443 68.6
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 5.8e-171 604.7 457 66.1
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 7.6e-171 604.4 466 64.4
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 6.4e-170 601.3 443 66.4
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 8.4e-170 600.9 464 64.0
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 1.6e-168 596.7 462 63.9
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 3.5e-168 595.5 467 63.4
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 6.0e-168 594.7 429 67.8
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 1.0e-167 594.0 454 63.7
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 2.3e-167 592.8 449 65.9
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 6.7e-167 591.3 443 67.0
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.5e-166 589.3 461 63.1
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 9.6e-166 587.4 446 65.2
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 1.1e-164 583.9 440 65.5
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 5.3e-164 581.6 461 62.9
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.0e-162 577.4 463 63.9
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.7e-162 576.6 470 64.3
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 2.2e-162 576.2 470 63.4
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 5.5e-161 571.6 454 62.3
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 6.0e-160 568.2 477 61.8
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 2.3e-159 566.2 463 63.9
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 5.1e-159 565.1 450 64.2
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 4.3e-158 562.0 449 64.1
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 5.7e-158 561.6 452 62.8
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 5.7e-158 561.6 444 62.8
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 7.4e-158 561.2 451 63.9
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 2.2e-157 559.7 399 69.7
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 3.7e-157 558.9 467 61.9
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.3e-157 558.1 435 63.9
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 1.8e-156 556.6 452 63.7
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 2.4e-156 556.2 418 66.3
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 6.9e-156 554.7 449 62.6
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 1.2e-155 553.9 452 63.7
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 3.4e-155 552.4 422 64.9
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 5.9e-155 551.6 449 62.4
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 7.7e-155 551.2 439 63.8
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 6.5e-154 548.1 467 59.3
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.9e-153 546.6 452 63.3
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 1.5e-150 537.0 485 59.4
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 2.0e-150 536.6 447 61.7
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 4.1e-148 528.9 495 57.2
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.5e-145 518.5 472 58.1
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 4.7e-144 515.4 356 71.1
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 3.0e-143 512.7 432 59.5
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.8e-141 506.1 460 59.3
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 2.1e-136 490.0 436 56.4
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 4.4e-134 482.3 436 55.3
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 5.3e-132 475.3 438 55.9
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 1.7e-130 470.3 335 69.3
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.5e-129 467.2 717 40.7
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 4.7e-128 462.2 433 54.3
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 2.2e-125 453.4 330 67.3
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 1.4e-124 450.7 318 70.1
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 2.7e-123 446.4 386 61.9
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 3.4e-118 429.5 312 67.0
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 7.7e-115 418.3 330 60.9
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 8.6e-114 414.8 445 47.6
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 2.3e-106 390.2 313 62.9
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 2.8e-104 383.3 364 52.5
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 6.8e-103 378.6 326 59.2
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 4.4e-102 375.9 393 46.3
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 9.8e-102 374.8 430 47.9
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 1.6e-99 367.5 318 58.2
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 2.7e-99 366.7 317 59.6
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.1e-96 357.1 401 46.4
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.5e-94 350.9 394 50.5
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.4e-92 343.6 251 70.5
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.4e-86 323.2 241 67.6
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.7e-82 310.8 349 49.9
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 2.5e-81 307.0 217 68.2
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 3.4e-78 296.6 216 69.4
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.0e-74 285.0 441 40.4
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.9e-68 264.2 216 61.1
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 2.1e-64 250.8 214 62.1
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 3.1e-63 246.9 174 66.7
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 2.4e-55 220.7 149 75.2
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 2.3e-50 204.1 237 47.7
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.2e-46 191.8 175 56.0
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 2.9e-45 187.2 137 70.1
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 4.2e-44 183.3 136 66.9
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 2.7e-43 180.6 137 65.7
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.9e-36 157.9 132 61.4
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.4e-28 131.7 93 66.7
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 1.8e-23 114.8 136 44.1
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 3.1e-23 114.0 374 27.3
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 2.6e-22 110.9 381 25.2
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 2.2e-21 107.8 404 25.7
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 5.0e-21 106.7 75 69.3
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 9.7e-17 92.4 148 41.2
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 3.5e-14 84.0 67 61.2
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 2.3e-10 71.2 410 24.4
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 1.3e-08 65.5 40 80.0


User provided reference genes

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