Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 5.4e-102 374.4 197 100.0
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.5e-83 312.4 197 82.7
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 4.3e-83 311.6 195 82.6
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 3.6e-82 308.5 197 80.7
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 3.6e-82 308.5 195 82.6
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 8.9e-81 303.9 196 78.6
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 2.0e-80 302.8 203 78.8
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 4.4e-80 301.6 194 81.4
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 9.9e-80 300.4 195 76.9
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 9.9e-80 300.4 197 78.7
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 9.9e-80 300.4 197 77.2
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 1.3e-79 300.1 194 79.4
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 2.9e-79 298.9 195 78.5
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 1.1e-78 297.0 195 79.0
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.9e-78 296.2 197 77.7
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 3.2e-78 295.4 197 77.2
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 1.2e-77 293.5 193 77.7
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 6.0e-77 291.2 195 80.0
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 2.3e-76 289.3 195 75.4
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.0e-76 288.9 197 76.1
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 5.1e-76 288.1 193 75.1
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 5.6e-75 284.6 194 73.7
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 7.3e-75 284.3 194 77.8
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 9.6e-75 283.9 196 76.0
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 6.2e-74 281.2 171 83.0
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 8.1e-74 280.8 195 72.3
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 2.4e-73 279.3 193 77.7
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 3.1e-73 278.9 195 73.3
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 4.0e-73 278.5 171 83.0
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 5.2e-73 278.1 197 75.6
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 6.8e-73 277.7 194 73.7
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 6.8e-73 277.7 191 74.3
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 6.8e-73 277.7 171 81.9
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 1.2e-72 276.9 197 73.6
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.5e-72 276.6 197 72.1
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 2.6e-72 275.8 197 74.1
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 2.6e-72 275.8 197 72.6
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 2.6e-72 275.8 197 72.6
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 3.4e-72 275.4 191 75.9
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 1.3e-71 273.5 195 72.8
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 1.3e-71 273.5 195 73.8
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 2.2e-71 272.7 194 73.2
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 2.9e-71 272.3 222 65.3
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 2.9e-71 272.3 189 73.0
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 3.8e-71 271.9 171 81.3
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 6.4e-71 271.2 195 72.3
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.4e-70 270.0 210 69.5
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 2.4e-70 269.2 201 71.1
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 3.2e-70 268.9 169 80.5
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 3.2e-70 268.9 196 74.0
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 4.2e-70 268.5 195 70.8
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 4.2e-70 268.5 189 72.5
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 5.4e-70 268.1 195 69.7
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 9.3e-70 267.3 166 79.5
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 9.3e-70 267.3 166 79.5
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 9.3e-70 267.3 166 79.5
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 2.7e-69 265.8 178 74.7
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 1.0e-68 263.8 189 73.0
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.0e-68 263.8 197 72.1
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 6.6e-68 261.2 191 70.7
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 6.6e-68 261.2 170 77.1
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 8.7e-68 260.8 174 75.9
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 3.3e-67 258.8 170 75.9
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 3.3e-67 258.8 170 74.7
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 1.3e-66 256.9 196 68.9
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 1.3e-66 256.9 196 68.9
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 1.6e-66 256.5 196 68.9
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 1.6e-66 256.5 196 68.9
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 1.6e-66 256.5 196 68.9
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 2.1e-66 256.1 197 70.6
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 2.8e-66 255.8 194 69.1
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 3.6e-66 255.4 155 83.9
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 3.6e-66 255.4 197 70.6
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 4.8e-66 255.0 214 64.0
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 4.8e-66 255.0 193 68.9
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 6.2e-66 254.6 194 68.6
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 6.2e-66 254.6 194 68.6
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 6.2e-66 254.6 194 68.6
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 1.1e-65 253.8 194 67.5
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 1.4e-65 253.4 195 68.2
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.8e-65 253.1 194 68.0
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 4.0e-65 251.9 194 68.6
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 4.0e-65 251.9 195 64.6
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 1.2e-64 250.4 194 68.0
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.2e-64 250.4 171 74.9
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 7.6e-64 247.7 193 69.4
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 1.7e-63 246.5 162 77.8
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 8.4e-63 244.2 153 81.0
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 7.1e-62 241.1 168 75.0
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 9.3e-62 240.7 164 77.4
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 1.6e-61 240.0 184 70.7
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 5.1e-60 235.0 199 63.3
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 2.5e-59 232.6 194 64.4
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 5.6e-59 231.5 155 77.4
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 9.6e-59 230.7 174 71.3
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.1e-58 229.6 153 77.8
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 4.8e-58 228.4 199 67.8
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 8.1e-58 227.6 153 77.1
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 1.4e-57 226.9 155 74.8
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 6.9e-57 224.6 130 84.6
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.5e-56 223.4 201 62.2
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 4.5e-56 221.9 185 64.9
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 1.9e-54 216.5 202 61.4
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 5.4e-54 214.9 152 73.7
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 6.0e-53 211.5 140 76.4
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 6.0e-53 211.5 152 71.7
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 1.3e-52 210.3 149 73.2
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.8e-52 209.9 198 57.1
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.8e-52 209.9 198 57.1
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 7.4e-51 204.5 182 58.8
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.6e-50 203.4 193 59.6
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.6e-50 203.4 193 59.6
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 3.7e-50 202.2 120 81.7
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 9.0e-49 197.6 152 68.4
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 9.0e-49 197.6 204 51.0
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.3e-46 187.6 204 48.0
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 3.5e-45 185.7 195 57.9
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 1.0e-44 184.1 195 57.4
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.0e-44 184.1 195 54.4
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 2.3e-44 183.0 195 51.3
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.4e-40 169.1 157 62.4
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 1.2e-37 160.6 303 41.6
Oeu030714.1 Olea europaea HOM05D003674 ORTHO05D004226 7.4e-35 151.4 116 71.6
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 1.2e-32 144.1 156 54.5
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 1.5e-32 143.7 173 50.3
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 6.5e-31 138.3 96 75.0
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 1.0e-28 131.0 74 82.4
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 5.1e-28 128.6 83 68.7
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 8.8e-28 127.9 195 43.1
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 5.7e-27 125.2 206 41.7
Nitab4.5_0000638g0280 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.4e-25 119.8 137 51.8
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 3.1e-25 119.4 151 48.3
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.5e-24 117.1 71 81.7
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 2.0e-24 116.7 72 81.9
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 3.4e-24 115.9 71 78.9
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 2.5e-22 109.8 71 76.1
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.0e-20 104.4 153 37.9
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.6e-19 99.8 142 36.6
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.7e-19 97.8 141 37.6
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 6.3e-18 95.1 141 35.5
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.1e-17 91.3 142 35.9
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.5e-16 90.5 168 35.1
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.0e-16 90.1 166 33.1
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 1.7e-10 70.5 95 38.9
SEGI_38669 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 6.3e-10 68.6 57 63.2
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.5e-08 62.8 93 35.5
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.0e-07 61.2 93 38.7
Nitab4.5_0012835g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.9e-06 57.0 42 66.7


User provided reference genes

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