Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 0.0e+00 1731.1 1111 100.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 1.6e-288 996.5 1108 62.7
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 5.7e-241 838.6 1098 57.4
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.7e-240 835.9 1108 60.8
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.8e-223 780.4 1115 58.7
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.8e-202 710.7 1114 52.5
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 7.0e-199 698.7 1115 49.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-198 698.0 1115 49.6
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 4.6e-190 669.5 1116 49.6
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 1.9e-188 664.1 1114 51.2
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 2.5e-188 663.7 1114 51.0
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 9.5e-188 661.8 1200 47.9
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 3.6e-187 659.8 1114 44.3
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 1.3e-184 651.4 1108 49.0
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.4e-183 647.9 1109 43.7
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 2.4e-183 647.1 1116 46.8
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 8.1e-179 632.1 1118 47.0
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.1e-178 631.7 1110 46.3
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.4e-178 631.3 1109 45.4
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 3.1e-178 630.2 1107 46.3
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.2e-177 628.2 1109 43.3
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 5.4e-175 619.4 1029 48.8
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.1e-175 619.0 1118 42.5
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 4.6e-174 616.3 1107 43.3
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 3.6e-171 606.7 1116 46.1
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 4.9e-168 596.3 1118 43.1
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.0e-165 588.6 1115 49.3
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 3.9e-165 586.6 1144 47.3
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 8.7e-165 585.5 1116 41.7
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.1e-162 578.6 1048 40.7
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 3.4e-161 573.5 1113 41.2
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.4e-161 573.2 1246 39.2
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 5.8e-161 572.8 1119 39.7
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 5.8e-161 572.8 1107 45.6
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.4e-159 568.2 1015 42.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.2e-159 567.0 1105 46.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.1e-159 565.8 1113 48.2
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 7.1e-159 565.8 1312 39.3
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.6e-158 564.7 1110 42.8
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 7.8e-158 562.4 1111 47.3
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.0e-157 562.0 1099 46.2
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.6e-153 547.4 1113 47.3
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 3.4e-153 547.0 1120 43.0
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.9e-152 543.9 1097 43.9
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.3e-149 535.0 1077 41.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 2.3e-149 534.3 1109 45.1
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 6.7e-149 532.7 1098 40.0
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.3e-148 530.4 1113 45.7
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 4.3e-148 530.0 1114 40.3
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.3e-147 528.5 1108 44.8
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.6e-147 528.1 1109 44.9
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-146 525.4 996 44.7
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 6.9e-146 522.7 1031 48.4
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.8e-144 516.9 1115 42.0
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.4e-143 515.0 1116 40.5
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 5.5e-143 513.1 1095 43.9
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.1e-142 511.1 1078 39.3
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.1e-140 505.4 1096 41.1
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 3.3e-140 503.8 1109 46.5
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 5.6e-140 503.1 1069 37.6
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 5.6e-140 503.1 1080 43.7
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 6.2e-139 499.6 1105 43.1
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 6.2e-139 499.6 1105 43.1
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.8e-138 498.0 1116 42.4
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 3.1e-138 497.3 1085 40.9
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 2.6e-137 494.2 1115 43.7
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.7e-136 491.5 1109 43.7
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.1e-135 488.8 1311 38.1
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.6e-129 467.6 1107 43.5
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.1e-127 462.2 1110 42.3
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 3.6e-118 430.6 1130 36.3
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.4e-116 423.7 1667 30.1
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 9.7e-116 422.5 1116 41.4
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 4.1e-114 417.2 887 36.9
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 3.8e-112 410.6 1113 40.2
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.8e-112 410.6 877 39.3
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.9e-111 408.3 1100 42.0
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.2e-111 407.5 1116 35.7
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 3.6e-110 404.1 1073 39.5
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.7e-99 368.6 1116 33.2
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 5.3e-98 363.6 1116 33.4
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 4.5e-97 360.5 1103 32.5
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 3.2e-95 354.4 1108 32.4
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.7e-94 350.5 1108 38.3
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.5e-87 328.9 1064 34.1
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.3e-87 327.8 354 57.1
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 3.7e-83 314.3 790 37.2
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 2.3e-80 305.1 1110 35.4
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 5.0e-80 303.9 512 41.8
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 6.6e-80 303.5 1161 29.5
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.1e-79 302.8 1113 32.2
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 2.3e-77 295.0 755 35.9
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.6e-64 250.4 496 40.1
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 4.7e-62 244.2 1076 27.5
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.4e-60 237.7 334 46.7
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 8.3e-59 233.4 1106 30.1
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 5.4e-58 230.7 377 41.1
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 5.1e-56 224.2 1209 28.6
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 2.5e-55 221.9 269 52.8
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 2.0e-52 212.2 649 33.6
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 3.8e-51 208.0 1094 25.3
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 8.7e-48 196.8 736 28.4
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.3e-47 193.7 832 28.8
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.0e-45 188.0 341 41.3
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 4.0e-45 188.0 1079 31.6
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 5.3e-45 187.6 407 38.1
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.4e-44 184.9 520 43.5
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.3e-43 183.0 377 37.1
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 3.5e-41 174.9 397 35.8
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 1.4e-37 162.9 225 48.4
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.8e-37 162.5 995 29.8
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 8.4e-35 153.7 1124 29.6
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.4e-34 152.9 371 34.8
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.5e-31 142.9 307 36.2
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 5.6e-31 141.0 266 38.7
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 9.6e-31 140.2 265 40.4
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.7e-30 138.3 207 45.4
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 4.8e-30 137.9 1099 23.9
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 6.2e-30 137.5 1114 30.7
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 9.0e-29 133.7 450 33.1
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.3e-27 129.8 339 32.7
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 8.4e-27 127.1 174 51.1
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.9e-26 125.9 230 42.2
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.5e-26 125.6 177 50.8
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 2.1e-25 122.5 167 46.7
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.8e-24 119.4 197 46.2
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 3.9e-24 118.2 264 37.1
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 8.7e-24 117.1 903 30.1
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 1.9e-23 115.9 176 48.3
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.9e-23 115.9 176 48.3
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 2.5e-23 115.5 495 25.5
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.3e-23 114.8 173 49.7
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 3.7e-22 111.7 141 44.7
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 4.2e-18 98.2 642 23.4
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.3e-18 97.1 163 41.7
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.3e-18 97.1 163 41.7
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.1e-17 95.9 162 42.0
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.7e-17 95.5 146 40.4
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 4.6e-17 94.7 169 44.4
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 3.0e-16 92.0 197 40.1
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.0e-16 92.0 240 39.6
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 5.1e-16 91.3 903 29.7
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 7.4e-15 87.4 369 27.4
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 2.8e-14 85.5 141 44.0
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 6.3e-14 84.3 151 42.4
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 8.2e-14 84.0 199 38.2
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.8e-13 82.8 261 31.4
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.8e-13 82.8 261 31.4
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 4.1e-13 81.6 546 25.6
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 2.6e-12 79.0 101 48.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.4e-10 73.2 1114 26.9
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 5.5e-10 71.2 146 36.3
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 9.4e-10 70.5 632 22.3
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 1.8e-08 66.2 124 42.7
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 2.3e-08 65.9 123 34.1
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 3.0e-08 65.5 105 47.6
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.0e-08 65.5 81 45.7
Aqoxy3G00575 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 6.7e-08 64.3 642 23.5
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 6.7e-08 64.3 224 33.5
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 1.5e-07 63.2 88 43.2
SEGI_34534 Sequoiadendron giganteum HOM05D002721 ORTHO05D002919 2.0e-07 62.8 415 25.1
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 7.4e-07 60.8 645 22.2
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 9.7e-07 60.5 50 62.0
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.7e-06 59.7 545 23.9
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.7e-06 59.7 99 45.5
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.2e-06 59.3 103 41.7
BolC6t39341H Brassica oleracea HOM05D002721 ORTHO05D002919 4.8e-06 58.2 433 23.3
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 4.8e-06 58.2 411 24.6
TAR629G3028 Trochodendron aralioides HOM05D002721 ORTHO05D002919 8.2e-06 57.4 455 22.6


User provided reference genes

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