Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 4.1e-75 284.6 143 100.0
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 8.2e-68 260.4 142 92.3
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 1.0e-65 253.4 142 90.1
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 1.3e-65 253.1 144 87.5
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 2.2e-65 252.3 144 90.3
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 6.5e-65 250.8 142 88.7
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 6.5e-65 250.8 142 88.7
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 6.5e-65 250.8 144 86.8
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.5e-64 248.8 143 88.8
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 3.2e-64 248.4 144 86.1
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 4.2e-64 248.1 144 88.2
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 4.2e-64 248.1 143 90.2
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 5.5e-64 247.7 145 86.9
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 5.5e-64 247.7 144 88.2
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 9.4e-64 246.9 144 89.6
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 9.4e-64 246.9 142 88.0
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.2e-63 246.5 145 86.9
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.6e-63 246.1 145 86.9
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 1.6e-63 246.1 145 86.9
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 2.1e-63 245.7 144 88.2
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 2.7e-63 245.4 144 87.5
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 3.6e-63 245.0 143 86.0
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 3.6e-63 245.0 144 87.5
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 3.6e-63 245.0 144 87.5
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 1.0e-62 243.4 145 85.5
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 1.0e-62 243.4 142 87.3
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.4e-62 243.0 146 87.7
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.8e-62 242.7 142 86.6
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 3.0e-62 241.9 144 85.4
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 3.9e-62 241.5 144 84.0
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 6.7e-62 240.7 145 85.5
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 8.8e-62 240.4 144 86.8
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 1.1e-61 240.0 145 86.2
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 2.0e-61 239.2 145 85.5
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 2.0e-61 239.2 146 84.9
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 2.0e-61 239.2 143 86.0
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 3.3e-61 238.4 145 86.2
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 4.4e-61 238.0 146 85.6
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 4.4e-61 238.0 144 85.4
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 7.4e-61 237.3 146 84.2
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 7.4e-61 237.3 157 79.6
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 9.7e-61 236.9 145 84.1
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 9.7e-61 236.9 140 85.0
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 1.7e-60 236.1 140 85.0
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 2.2e-60 235.7 145 86.2
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 2.2e-60 235.7 145 85.5
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 2.8e-60 235.3 143 84.6
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 3.7e-60 235.0 145 84.1
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 1.4e-59 233.0 144 84.0
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 3.1e-59 231.9 145 82.8
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 5.3e-59 231.1 134 88.1
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 7.0e-59 230.7 132 89.4
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 1.2e-58 229.9 145 82.8
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.2e-58 229.9 143 82.5
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.2e-58 229.9 145 83.4
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 1.6e-58 229.6 143 82.5
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.6e-58 229.6 143 82.5
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.6e-58 229.6 143 82.5
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 1.6e-58 229.6 146 82.9
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 2.0e-58 229.2 142 85.2
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 2.6e-58 228.8 145 82.8
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 2.6e-58 228.8 145 82.8
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 3.5e-58 228.4 145 82.1
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 3.5e-58 228.4 145 82.8
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 3.5e-58 228.4 145 84.1
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 4.5e-58 228.0 145 82.1
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 5.9e-58 227.6 145 82.1
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 5.9e-58 227.6 145 82.8
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 7.7e-58 227.3 145 81.4
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 7.7e-58 227.3 145 81.4
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 7.7e-58 227.3 132 88.6
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 7.7e-58 227.3 145 82.1
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 1.0e-57 226.9 145 81.4
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 1.0e-57 226.9 145 80.7
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.0e-57 226.9 130 89.2
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 1.0e-57 226.9 145 82.1
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.0e-57 226.9 145 82.1
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 80.7
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 81.4
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 81.4
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 81.4
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 81.4
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 81.4
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 2.9e-57 225.3 145 80.0
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 5.0e-57 224.6 145 80.7
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 5.0e-57 224.6 145 82.1
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 5.0e-57 224.6 145 81.4
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 5.0e-57 224.6 145 82.1
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 6.5e-57 224.2 145 81.4
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 8.5e-57 223.8 130 87.7
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 8.5e-57 223.8 144 80.6
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 1.1e-56 223.4 144 82.6
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 1.9e-56 222.6 145 81.4
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 2.5e-56 222.2 201 63.2
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 2.5e-56 222.2 144 83.3
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 3.2e-56 221.9 145 82.8
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 3.2e-56 221.9 141 81.6
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 1.6e-55 219.5 146 79.5
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 1.6e-55 219.5 145 81.4
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 2.7e-55 218.8 143 79.7
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 3.6e-55 218.4 144 81.9
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 3.6e-55 218.4 144 81.9
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 6.1e-55 217.6 141 80.1
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 8.0e-55 217.2 144 82.6
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 8.0e-55 217.2 145 79.3
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 1.4e-54 216.5 145 79.3
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 1.4e-54 216.5 144 80.6
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 3.0e-54 215.3 144 79.9
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 6.7e-54 214.2 144 79.2
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 6.7e-54 214.2 152 77.0
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 8.8e-54 213.8 123 87.0
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 8.8e-54 213.8 145 80.0
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 1.5e-53 213.0 146 77.4
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 1.5e-53 213.0 145 80.0
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.0e-53 212.6 145 80.0
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 4.4e-53 211.5 135 83.0
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 1.7e-52 209.5 146 76.0
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 2.2e-52 209.1 144 78.5
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 2.8e-52 208.8 143 78.3
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 1.4e-51 206.5 179 65.4
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 1.8e-51 206.1 128 84.4
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 4.1e-51 204.9 143 77.6
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 5.3e-51 204.5 149 76.5
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 2.0e-50 202.6 144 75.0
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 3.5e-50 201.8 147 75.5
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 3.5e-50 201.8 132 80.3
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 1.3e-49 199.9 145 75.2
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 2.9e-49 198.7 144 74.3
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 3.8e-49 198.4 143 75.5
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 4.2e-48 194.9 145 75.2
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 4.2e-48 194.9 145 75.2
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 4.2e-48 194.9 145 75.2
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 5.5e-48 194.5 143 74.8
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 9.4e-48 193.7 169 67.5
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 3.6e-47 191.8 144 74.3
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 8.0e-47 190.7 99 93.9
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 6.8e-46 187.6 133 76.7
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 8.8e-46 187.2 143 72.7
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 1.2e-45 186.8 142 73.9
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 5.7e-45 184.5 120 81.7
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 2.8e-44 182.2 145 73.1
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 4.8e-44 181.4 116 83.6
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 1.4e-43 179.9 133 77.4
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 1.8e-43 179.5 144 68.8
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.4e-43 179.1 124 80.6
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 2.4e-43 179.1 131 74.8
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 4.1e-43 178.3 139 72.7
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 3.5e-42 175.3 136 76.5
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 3.5e-42 175.3 87 95.4
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 4.5e-42 174.9 153 67.3
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 5.9e-42 174.5 152 66.4
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 5.9e-42 174.5 121 78.5
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 7.7e-42 174.1 121 80.2
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 1.6e-39 166.4 132 71.2
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 8.0e-39 164.1 91 87.9
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 2.3e-38 162.5 121 76.0
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 8.9e-38 160.6 142 65.5
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.2e-37 160.2 112 79.5
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 5.4e-35 151.4 98 82.7
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.6e-34 149.8 142 60.6
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 1.0e-33 147.1 102 78.4
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 2.3e-33 146.0 111 72.1
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 4.3e-32 141.7 82 81.7
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.8e-31 139.0 119 68.1
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.8e-31 139.0 119 68.1
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 6.8e-30 134.4 138 58.0
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 5.8e-29 131.3 105 74.3
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 9.8e-29 130.6 122 59.8
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.8e-27 126.3 97 75.3
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 7.0e-27 124.4 143 55.2
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 6.0e-26 121.3 69 82.6
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 2.3e-25 119.4 132 54.5
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 3.0e-25 119.0 64 89.1
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 3.9e-25 118.6 132 56.1
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 2.8e-23 112.5 80 76.2
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 1.4e-22 110.2 77 76.6
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 1.8e-22 109.8 76 77.6
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 4.9e-20 101.7 100 60.0
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 4.1e-19 98.6 81 69.1
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.3e-17 92.8 45 91.1
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 4.3e-16 88.6 75 68.0
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 2.3e-09 66.2 35 94.3
DCAR_013632 Daucus carota HOM05D003818 ORTHO05D175173 6.8e-06 54.7 78 48.7


User provided reference genes

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