Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.7e-41 171.0 81 100.0
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 1.9e-21 105.5 73 64.4
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.4e-19 99.4 107 52.3
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 1.2e-18 96.3 79 54.4
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 5.8e-18 94.0 77 58.4
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 7.5e-18 93.6 79 55.7
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 9.8e-18 93.2 70 64.3
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.7e-17 92.4 79 54.4
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 2.2e-17 92.0 77 55.8
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 4.9e-17 90.9 77 54.5
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.4e-16 88.6 63 61.9
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.4e-16 88.6 63 61.9
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 2.4e-16 88.6 68 61.8
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 5.4e-16 87.4 59 67.8
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.2e-15 86.3 79 53.2
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 2.0e-15 85.5 65 58.5
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 6.0e-15 84.0 81 53.1
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 7.8e-15 83.6 71 59.2
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 7.8e-15 83.6 69 56.5
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.3e-14 82.8 66 53.0
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.3e-14 82.8 76 52.6
AUR62016000 Chenopodium quinoa HOM05D025484 ORTHO05D003332 2.3e-14 82.0 57 57.9
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 3.9e-14 81.3 67 58.2
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 3.9e-14 81.3 75 50.7
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 5.0e-14 80.9 87 48.3
Sc13g0008550 Simmondsia chinensis HOM05D025484 ORTHO05D003332 6.6e-14 80.5 59 61.0
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 8.6e-14 80.1 49 63.3
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 1.1e-13 79.7 62 59.7
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 1.9e-13 79.0 106 39.6
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.9e-13 79.0 77 49.4
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.5e-13 78.6 65 55.4
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 4.3e-13 77.8 62 58.1
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 5.6e-13 77.4 65 52.3
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 7.3e-13 77.0 73 52.1
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 9.5e-13 76.6 79 44.3
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 9.5e-13 76.6 65 52.3
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 9.5e-13 76.6 106 39.6
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 1.2e-12 76.3 79 44.3
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.2e-12 76.3 79 44.3
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.2e-12 76.3 79 44.3
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.2e-12 76.3 79 44.3
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 1.2e-12 76.3 69 49.3
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 1.2e-12 76.3 81 46.9
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 1.6e-12 75.9 69 52.2
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 2.1e-12 75.5 69 49.3
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 2.8e-12 75.1 68 47.1
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 2.8e-12 75.1 64 57.8
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 2.8e-12 75.1 65 56.9
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 2.8e-12 75.1 64 51.6
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 3.6e-12 74.7 70 51.4
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 3.6e-12 74.7 63 54.0
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 3.6e-12 74.7 62 54.8
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 4.7e-12 74.3 59 52.5
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 6.2e-12 73.9 64 50.0
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 6.2e-12 73.9 59 55.9
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 8.1e-12 73.6 129 34.1
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 8.1e-12 73.6 81 46.9
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.1e-11 73.2 62 53.2
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.1e-11 73.2 66 51.5
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.1e-11 73.2 63 52.4
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 1.4e-11 72.8 68 51.5
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.4e-11 72.8 63 54.0
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.4e-11 72.8 77 44.2
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.4e-11 72.8 65 50.8
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.8e-11 72.4 64 54.7
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 2.3e-11 72.0 68 52.9
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.1e-11 71.6 62 51.6
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.1e-11 71.6 62 51.6
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 3.1e-11 71.6 65 49.2
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 3.1e-11 71.6 71 47.9
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 3.1e-11 71.6 83 44.6
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 4.0e-11 71.2 59 52.5
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 5.2e-11 70.9 70 47.1
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 5.2e-11 70.9 68 52.9
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 6.8e-11 70.5 69 44.9
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.9e-11 70.1 65 44.6
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 8.9e-11 70.1 56 58.9
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 8.9e-11 70.1 62 46.8
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.2e-10 69.7 62 51.6
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 1.2e-10 69.7 75 45.3
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.2e-10 69.7 59 52.5
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.2e-10 69.7 59 55.9
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.5e-10 69.3 80 45.0
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 1.5e-10 69.3 63 50.8
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 2.0e-10 68.9 63 50.8
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.6e-10 68.6 63 52.4
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.6e-10 68.6 55 58.2
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 2.6e-10 68.6 55 58.2
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.6e-10 68.6 61 47.5
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 3.4e-10 68.2 62 50.0
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 4.4e-10 67.8 66 47.0
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 5.8e-10 67.4 76 46.1
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 5.8e-10 67.4 64 48.4
Lj8C25T11 Lonicera japonica HOM05D003520 ORTHO05D003332 7.5e-10 67.0 49 61.2
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 7.5e-10 67.0 63 49.2
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 9.9e-10 66.6 62 48.4
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 9.9e-10 66.6 73 46.6
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 9.9e-10 66.6 60 55.0
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.3e-09 66.2 56 51.8
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 1.3e-09 66.2 63 47.6
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 1.7e-09 65.9 71 45.1
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 1.7e-09 65.9 65 46.2
arahy.Tifrunner.gnm1.ann1.SM3UTK Arachis hypogaea HOM05D003520 ORTHO05D003332 2.2e-09 65.5 53 54.7
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 2.9e-09 65.1 58 51.7
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.9e-09 65.1 67 47.8
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.9e-09 65.1 67 47.8
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 2.9e-09 65.1 76 44.7
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.9e-09 65.1 60 50.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 3.7e-09 64.7 66 43.9
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 4.9e-09 64.3 66 43.9
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 6.4e-09 63.9 55 54.5
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 6.4e-09 63.9 63 46.0
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 8.3e-09 63.5 62 51.6
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 8.3e-09 63.5 56 48.2
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 8.3e-09 63.5 62 50.0
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 8.3e-09 63.5 62 48.4
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 8.3e-09 63.5 51 54.9
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.1e-08 63.2 70 45.7
Psat0s2241g0160 Pisum sativum HOM05D003520 ORTHO05D003332 1.1e-08 63.2 53 52.8
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.1e-08 63.2 66 47.0
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.1e-08 63.2 61 50.8
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 1.4e-08 62.8 62 45.2
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 1.4e-08 62.8 63 44.4
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 1.4e-08 62.8 65 41.5
DCAR_020242 Daucus carota HOM05D003520 ORTHO05D003332 1.9e-08 62.4 47 57.4
Hund04730 Selenicereus undatus HOM05D025484 ORTHO05D003332 1.9e-08 62.4 59 50.8
TPR.G10738 Trifolium pratense HOM05D003520 ORTHO05D003332 1.9e-08 62.4 53 52.8
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 2.4e-08 62.0 66 47.0
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 2.4e-08 62.0 56 51.8
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 3.2e-08 61.6 63 44.4
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 3.2e-08 61.6 64 43.8
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 4.1e-08 61.2 47 59.6
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 4.1e-08 61.2 62 50.0
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 4.1e-08 61.2 63 47.6
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 9.2e-08 60.1 52 53.8
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 9.2e-08 60.1 54 46.3
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 9.2e-08 60.1 72 43.1
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.2e-07 59.7 71 40.8
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.1e-07 58.9 53 49.1
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 2.1e-07 58.9 79 38.0
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 2.1e-07 58.9 59 49.2
Medtr6g054960 Medicago truncatula HOM05D003520 ORTHO05D003332 2.1e-07 58.9 53 49.1
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.5e-07 58.2 50 52.0
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 3.5e-07 58.2 73 41.1
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 4.6e-07 57.8 68 38.2
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 4.6e-07 57.8 61 47.5
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 4.6e-07 57.8 59 54.2
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 6.0e-07 57.4 59 54.2
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 6.0e-07 57.4 67 43.3
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 6.0e-07 57.4 54 50.0
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.0e-06 56.6 49 53.1
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 1.0e-06 56.6 70 41.4
Lalb_Chr01g0009251 Lupinus albus HOM05D003520 ORTHO05D003332 1.0e-06 56.6 33 72.7
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.0e-06 56.6 59 47.5
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 1.0e-06 56.6 65 43.1
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.3e-06 56.2 60 48.3
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 1.3e-06 56.2 66 42.4
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 1.7e-06 55.8 70 37.1
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 1.7e-06 55.8 70 45.7
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 1.7e-06 55.8 46 58.7
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 1.7e-06 55.8 46 58.7
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 2.3e-06 55.5 63 47.6
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 2.3e-06 55.5 48 56.2
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.3e-06 55.5 59 47.5
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 3.0e-06 55.1 70 37.1
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 3.0e-06 55.1 72 37.5
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 3.0e-06 55.1 58 44.8
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 3.0e-06 55.1 50 52.0
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 3.9e-06 54.7 66 39.4
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 3.9e-06 54.7 55 47.3
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.9e-06 54.7 55 47.3
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.9e-06 54.7 55 47.3
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.9e-06 54.7 55 47.3
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.9e-06 54.7 55 47.3
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 3.9e-06 54.7 49 55.1
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 3.9e-06 54.7 70 37.1
DCAR_005093 Daucus carota HOM05D003109 ORTHO05D003578 5.1e-06 54.3 49 44.9
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 5.1e-06 54.3 53 50.9
Os04g0193200 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 5.1e-06 54.3 57 45.6
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 6.6e-06 53.9 47 55.3
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 8.6e-06 53.5 62 41.9


User provided reference genes

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