Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.7e-103 377.9 191 100.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.6e-71 271.9 191 74.3
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 7.9e-50 201.1 254 51.2
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 6.3e-47 191.4 197 58.4
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.1e-46 190.7 196 58.2
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 3.1e-46 189.1 192 55.7
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 4.1e-46 188.7 199 58.8
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 5.3e-46 188.3 194 58.2
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.6e-42 176.8 197 55.8
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 3.6e-42 175.6 194 51.5
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 5.1e-41 171.8 194 53.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 8.7e-41 171.0 194 50.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.5e-40 170.2 180 56.1
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-40 170.2 190 52.6
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.5e-40 169.5 200 51.0
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.3e-40 169.1 187 49.2
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 3.3e-40 169.1 187 50.3
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.7e-40 168.3 187 51.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 5.7e-40 168.3 194 54.6
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 7.4e-40 167.9 190 52.6
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.3e-39 167.2 181 55.8
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.2e-39 166.4 186 48.9
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.8e-39 166.0 186 52.2
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.8e-39 165.2 182 53.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.1e-38 164.1 172 55.2
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.1e-38 164.1 185 51.4
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-38 163.7 194 52.6
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.4e-38 162.9 182 53.8
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.4e-38 162.9 155 60.6
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.1e-38 162.5 180 54.4
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 5.3e-38 161.8 191 49.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 5.3e-38 161.8 193 52.3
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.5e-37 160.2 227 48.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.4e-37 159.1 164 55.5
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.3e-36 157.1 115 67.8
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 1.7e-36 156.8 186 51.1
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.7e-36 156.8 203 47.3
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.2e-36 156.4 172 54.1
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 6.5e-36 154.8 190 48.4
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.5e-36 154.5 174 51.7
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-35 154.1 172 53.5
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-35 154.1 172 53.5
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-35 152.9 192 49.5
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.5e-35 152.9 207 50.2
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 5.5e-35 151.8 196 50.5
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.2e-34 150.6 190 48.4
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.2e-34 150.6 192 49.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.1e-34 149.8 192 49.0
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.7e-34 149.4 164 51.2
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.7e-34 149.4 160 52.5
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.7e-34 149.4 164 53.0
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 4.6e-34 148.7 165 49.1
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 7.9e-34 147.9 194 46.4
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.4e-33 147.1 164 52.4
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 2.3e-33 146.4 195 47.7
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.7e-33 144.8 187 47.6
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.8e-33 144.4 187 47.6
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 3.3e-32 142.5 193 49.7
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 4.4e-32 142.1 174 48.3
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.7e-32 141.7 187 47.1
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 7.4e-32 141.4 198 47.0
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 9.7e-32 141.0 125 53.6
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.3e-31 140.6 177 49.2
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.3e-31 140.6 194 48.5
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.2e-31 139.8 193 48.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 6.3e-31 138.3 196 46.4
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 8.2e-31 137.9 185 47.0
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 8.2e-31 137.9 115 59.1
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 8.2e-31 137.9 115 59.1
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.4e-30 137.1 188 44.1
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.4e-30 137.1 171 49.7
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.8e-30 136.7 145 49.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 5.3e-30 135.2 194 46.9
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.9e-30 134.8 150 47.3
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.2e-29 134.0 141 49.6
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.5e-29 133.7 102 64.7
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.5e-29 133.7 158 50.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 3.4e-29 132.5 167 45.5
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 7.7e-29 131.3 185 44.3
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.0e-28 131.0 186 41.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.3e-28 130.6 166 48.2
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.2e-28 129.8 194 43.3
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.8e-28 129.0 106 62.3
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.8e-28 129.0 189 45.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.8e-28 129.0 147 45.6
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 3.8e-28 129.0 196 43.9
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 5.0e-28 128.6 169 47.9
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.5e-28 127.9 116 56.0
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.5e-28 127.9 147 45.6
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 1.1e-27 127.5 184 45.7
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.9e-27 126.7 208 39.4
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.9e-27 126.7 165 44.2
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.9e-27 126.7 187 42.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.5e-27 126.3 213 43.7
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 9.4e-27 124.4 139 48.2
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.2e-26 124.0 138 45.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.6e-26 123.6 195 43.6
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.1e-26 123.2 179 41.3
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.7e-26 122.9 133 48.9
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 6.1e-26 121.7 169 43.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 6.1e-26 121.7 191 41.4
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.3e-25 119.8 185 42.7
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.3e-25 119.8 134 50.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.0e-25 119.4 165 44.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 4.4e-24 115.5 215 36.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 4.4e-24 115.5 135 43.0
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 7.4e-24 114.8 194 40.7
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.7e-23 113.6 196 39.3
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.7e-23 113.6 204 37.7
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.7e-23 113.6 204 37.7
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.7e-23 113.6 113 48.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.7e-23 113.6 96 57.3
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.7e-23 113.6 141 47.5
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-22 110.9 202 35.1
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.1e-22 110.9 202 35.1
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.1e-22 110.9 181 39.8
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.1e-22 110.9 202 35.1
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.1e-22 110.9 181 39.8
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-22 110.9 96 57.3
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.4e-22 110.5 174 39.1
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.8e-22 110.2 186 38.7
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 1.8e-22 110.2 186 39.8
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 3.1e-22 109.4 114 49.1
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 4.1e-22 109.0 119 47.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 5.3e-22 108.6 97 52.6
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 5.3e-22 108.6 149 43.0
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.2e-21 107.5 203 34.0
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.2e-21 107.5 162 42.0
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.2e-21 107.5 102 52.9
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.6e-21 106.3 129 50.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.5e-21 105.5 179 38.0
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.7e-20 103.6 156 39.1
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.7e-20 103.6 193 38.3
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.7e-20 103.6 202 31.7
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 5.0e-20 102.1 150 40.7
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.9e-19 100.1 186 35.5
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.5e-19 99.8 81 59.3
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 4.2e-19 99.0 184 34.2
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.7e-18 96.3 197 32.5
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 8.0e-18 94.7 152 38.8
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.4e-17 94.0 161 39.1
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.8e-17 93.6 178 38.2
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.2e-16 90.9 91 45.1
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 4.4e-16 89.0 95 43.2
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.7e-16 88.6 134 35.1
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.1e-14 82.4 187 36.9
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.3e-14 82.0 171 30.4
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 5.3e-14 82.0 117 45.3
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.0e-13 80.1 148 38.5
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 7.7e-13 78.2 157 36.9
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-10 70.9 126 41.3
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.2e-08 64.3 45 62.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.0e-08 63.5 82 39.0
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.8e-07 59.7 40 67.5


User provided reference genes

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