Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.1e-280 966.5 502 100.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.5e-212 743.0 491 80.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 1.2e-209 733.4 495 80.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.4e-202 709.9 496 77.6
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.4e-167 593.6 505 67.1
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 5.3e-162 575.1 503 64.4
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.6e-161 572.8 507 64.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 7.6e-161 571.2 507 64.5
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.3e-160 570.5 507 63.7
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.4e-159 567.0 505 63.2
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.6e-158 563.5 506 63.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.7e-158 562.8 507 63.1
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 4.6e-158 562.0 503 63.2
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.8e-157 560.1 507 63.5
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.4e-156 554.7 506 62.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 7.4e-156 554.7 506 62.6
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 6.3e-155 551.6 506 62.5
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.8e-154 550.1 506 62.5
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 5.3e-154 548.5 504 61.7
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 5.3e-154 548.5 505 62.4
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 9.0e-154 547.7 505 61.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.9e-153 545.0 507 62.3
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.6e-153 544.7 504 62.1
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.0e-152 542.0 507 61.9
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-151 540.8 507 61.5
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-151 540.4 506 61.9
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 5.5e-151 538.5 505 61.2
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 4.8e-147 525.4 506 61.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.8e-146 523.5 507 60.0
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.8e-144 515.8 498 59.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.5e-143 513.1 506 60.7
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.2e-143 512.3 466 60.7
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-142 510.0 503 57.9
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.0e-141 507.7 497 59.0
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.4e-141 507.3 503 57.7
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 5.1e-141 505.4 508 57.9
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.5e-140 503.8 508 58.3
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.8e-139 499.6 506 58.7
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 8.2e-139 498.0 506 58.3
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.2e-139 498.0 503 57.1
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 7.0e-138 495.0 507 57.8
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 2.0e-137 493.4 510 55.7
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.0e-136 491.1 507 59.4
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.0e-136 491.1 506 57.7
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.3e-136 490.7 509 58.9
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.9e-136 489.6 498 58.2
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.5e-135 486.5 647 48.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.6e-134 483.8 505 58.0
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 6.1e-134 481.9 507 57.2
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 6.1e-134 481.9 507 55.8
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.0e-133 479.6 507 56.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.4e-132 475.7 505 54.1
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 7.4e-132 474.9 434 62.7
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-131 474.2 505 54.3
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-131 473.4 505 54.1
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.8e-130 470.3 507 55.4
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 7.0e-130 468.4 505 54.7
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.2e-129 467.6 504 55.2
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.5e-129 466.1 526 55.5
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 4.5e-129 465.7 505 56.2
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-128 464.2 504 55.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 8.5e-128 461.5 509 55.6
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 8.5e-128 461.5 496 55.6
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-127 460.7 494 57.7
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 4.4e-124 449.1 480 54.0
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 8.5e-120 434.9 499 54.5
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 2.1e-118 430.3 576 47.9
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 4.7e-118 429.1 505 51.5
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.4e-117 427.6 492 53.3
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.5e-116 421.8 437 57.9
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.8e-114 417.2 525 51.8
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 5.4e-114 415.6 493 52.1
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.0e-114 415.2 503 52.5
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 9.1e-114 414.8 497 52.1
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-113 413.7 492 52.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.9e-112 409.8 506 50.4
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.0e-112 409.1 491 50.1
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.1e-111 407.9 511 50.5
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.9e-111 407.1 493 50.7
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.5e-111 406.8 496 49.8
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 4.7e-110 402.5 509 49.5
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 6.1e-110 402.1 495 49.1
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.8e-109 400.6 496 49.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.2e-108 397.9 496 49.4
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.5e-108 397.5 528 49.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-108 396.7 487 52.0
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 7.5e-108 395.2 450 50.4
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 9.8e-108 394.8 492 51.0
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.7e-107 394.0 505 50.9
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.0e-106 388.7 449 49.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.3e-103 379.8 460 52.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.1e-102 377.1 511 48.7
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 3.6e-102 376.3 491 50.1
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 6.1e-102 375.6 406 52.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.1e-101 373.2 491 48.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.2e-100 371.3 494 49.0
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 5.8e-100 369.0 528 47.7
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 7.5e-100 368.6 491 48.1
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 7.5e-100 368.6 510 46.5
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.3e-99 367.9 494 48.0
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.2e-98 363.2 424 51.2
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.0e-97 360.5 495 45.7
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.3e-96 357.1 505 46.9
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 5.6e-95 352.4 511 47.6
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.8e-93 345.5 493 46.0
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 8.9e-93 345.1 493 46.2
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.5e-92 344.4 287 62.7
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.6e-92 343.6 500 47.2
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 2.6e-92 343.6 499 47.1
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.4e-92 343.2 495 47.3
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 5.8e-92 342.4 532 43.0
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.7e-91 339.7 520 45.2
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.2e-90 336.7 338 57.4
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.2e-89 334.7 494 45.3
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.1e-89 334.0 492 42.7
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.4e-85 321.2 491 45.4
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 4.9e-83 312.8 508 43.3
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.4e-82 310.5 485 44.5
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.5e-81 306.6 493 41.6
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-78 298.1 493 43.8
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-78 298.1 493 43.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.1e-78 297.4 500 43.4
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.8e-77 294.3 495 43.0
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.2e-77 292.7 493 43.0
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.5e-76 291.2 346 50.6
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 2.2e-75 287.3 496 42.1
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.9e-75 287.0 496 41.5
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.1e-74 285.0 496 42.1
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.9e-74 284.3 496 42.3
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.2e-73 281.6 495 40.8
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.7e-73 280.4 495 40.8
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.7e-72 277.7 495 39.4
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.9e-71 274.2 498 40.2
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 4.3e-71 273.1 496 43.5
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 9.0e-69 265.4 496 41.9
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 9.0e-69 265.4 502 39.8
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 4.9e-67 259.6 224 62.5
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.0e-64 251.9 495 40.6
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 8.7e-64 248.8 566 37.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 7.3e-63 245.7 502 40.4
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.2e-60 238.4 397 39.0
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 5.8e-60 236.1 504 37.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 7.9e-57 225.7 418 38.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 7.9e-57 225.7 447 37.6
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 4.8e-54 216.5 277 52.3
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.5e-52 211.5 282 43.3
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 5.5e-50 203.0 253 51.4
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.3e-48 198.4 338 39.6
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 4.3e-47 193.4 110 82.7
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 9.6e-47 192.2 444 35.1
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.9e-43 180.6 493 34.5
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 5.7e-39 166.4 441 35.6
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.7e-38 163.7 491 33.8
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.8e-37 161.4 98 77.6
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 6.5e-35 152.9 577 33.1
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.2e-28 132.1 184 41.3
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.2e-27 127.9 249 40.2
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.4e-23 113.6 463 31.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.7e-23 113.2 371 32.3
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.8e-22 110.2 455 30.5
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.2e-20 105.5 208 38.5
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.5e-18 97.8 440 28.9
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-15 89.0 98 64.3
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 6.8e-08 63.2 102 38.2


User provided reference genes

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