Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 2.5e-199 698.7 395 100.0
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 6.9e-133 478.0 394 74.6
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 5.9e-132 474.9 413 71.7
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 6.5e-131 471.5 409 71.6
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 7.7e-100 368.2 377 58.4
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 2.3e-96 356.7 397 54.2
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.7e-94 350.5 391 62.1
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 6.3e-94 348.6 396 58.6
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.2e-92 344.4 394 56.9
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 5.7e-87 325.5 411 49.9
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.3e-86 324.3 397 52.6
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 6.3e-86 322.0 391 56.3
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.8e-85 320.5 411 55.7
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 3.1e-85 319.7 403 51.4
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.2e-84 317.8 420 53.1
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 2.0e-84 317.0 399 49.9
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 5.9e-84 315.5 411 56.0
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 2.3e-83 313.5 397 52.4
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.3e-83 313.5 384 57.6
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.3e-83 313.5 407 49.4
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 3.8e-83 312.8 396 49.2
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.8e-83 312.8 395 50.4
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 8.6e-83 311.6 403 56.1
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 1.5e-82 310.8 414 52.7
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 3.3e-82 309.7 397 48.9
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.3e-82 309.3 400 54.0
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 7.3e-82 308.5 394 49.7
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.5e-82 308.1 385 56.1
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.1e-81 307.0 405 49.4
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 8.0e-81 305.1 397 53.4
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 8.0e-81 305.1 390 51.3
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 2.3e-80 303.5 394 48.5
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 5.2e-80 302.4 396 55.1
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 6.8e-80 302.0 379 51.7
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.2e-79 301.2 403 54.8
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 7.5e-79 298.5 397 53.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.3e-78 297.7 417 51.6
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 1.7e-78 297.4 388 49.0
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.2e-78 297.0 395 49.6
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 2.9e-78 296.6 405 49.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.1e-77 294.7 385 51.4
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.4e-77 294.3 397 47.6
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.9e-77 293.9 401 53.6
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.2e-76 291.2 393 51.7
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.7e-76 290.0 392 52.0
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 6.0e-76 288.9 377 48.8
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.7e-75 287.3 406 49.5
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.3e-75 287.0 386 48.2
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 3.0e-75 286.6 396 46.5
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.5e-74 284.3 386 47.7
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.9e-74 283.9 406 50.5
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 4.3e-74 282.7 396 47.0
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 5.6e-74 282.3 420 48.6
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 7.3e-74 282.0 395 49.1
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 9.5e-74 281.6 391 49.4
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.2e-73 281.2 407 45.5
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.6e-73 280.8 393 50.4
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.1e-73 280.4 395 45.6
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.4e-72 277.7 396 45.2
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.8e-72 277.3 397 46.3
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 4.0e-72 276.2 389 50.9
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.2e-72 275.8 393 48.6
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 1.2e-71 274.6 377 53.3
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 5.8e-71 272.3 397 48.6
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 7.5e-71 271.9 398 50.0
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 7.5e-71 271.9 400 47.2
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.3e-70 271.2 391 47.8
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.7e-70 270.8 397 49.4
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 2.2e-70 270.4 398 44.5
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 3.2e-69 266.5 386 52.1
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 9.2e-69 265.0 445 46.3
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 4.6e-68 262.7 386 49.0
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.3e-67 260.4 376 52.7
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 3.0e-67 260.0 406 49.3
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 3.9e-67 259.6 386 49.0
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 5.6e-66 255.8 334 46.7
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 5.8e-63 245.7 400 43.5
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 7.5e-63 245.4 402 45.8
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 2.9e-62 243.4 398 50.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.9e-62 243.4 335 46.9
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.9e-62 243.4 386 44.0
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 8.3e-62 241.9 396 42.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.9e-61 240.7 345 44.6
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 9.2e-61 238.4 406 43.6
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.2e-60 238.0 268 53.0
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 3.5e-60 236.5 377 50.7
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 7.8e-60 235.3 388 43.0
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 8.6e-59 231.9 404 42.6
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.0e-55 220.7 401 42.4
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 8.4e-54 215.3 418 44.0
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.1e-53 214.9 399 43.4
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.2e-53 213.4 217 56.7
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 3.5e-52 209.9 184 67.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.6e-52 209.5 405 43.7
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.0e-51 208.4 415 41.4
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 3.9e-51 206.5 414 42.8
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.1e-50 204.9 440 38.0
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.5e-50 204.5 409 42.1
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.5e-50 203.8 396 44.4
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.6e-49 201.1 403 39.7
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.6e-49 201.1 370 40.0
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 2.1e-49 200.7 363 40.8
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 2.1e-49 200.7 363 41.9
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.6e-49 199.9 423 35.0
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 4.7e-49 199.5 390 42.1
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 4.7e-49 199.5 390 42.1
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 4.7e-49 199.5 390 42.1
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.2e-49 199.1 421 42.3
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 6.2e-49 199.1 391 42.2
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 1.1e-48 198.4 365 43.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 1.1e-48 198.4 365 43.0
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 6.9e-48 195.7 387 45.5
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 6.9e-48 195.7 355 43.4
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 9.0e-48 195.3 403 36.7
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 2.6e-47 193.7 384 42.4
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 2.6e-47 193.7 384 42.4
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-45 187.6 387 43.2
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 5.4e-45 186.0 360 40.6
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 5.4e-45 186.0 193 57.5
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.7e-44 183.7 347 39.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 7.8e-44 182.2 393 38.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.0e-43 181.8 410 42.2
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.3e-43 181.4 392 40.1
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 1.3e-43 181.4 392 40.1
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 6.6e-43 179.1 275 50.5
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 8.7e-43 178.7 411 39.4
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 2.8e-41 173.7 388 37.6
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 6.9e-40 169.1 353 37.7
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 5.8e-39 166.0 265 46.0
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 4.9e-38 162.9 342 40.9
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 6.4e-38 162.5 356 42.1
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.2e-37 159.8 415 39.8
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.3e-37 158.7 254 44.5
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 3.5e-36 156.8 377 35.3
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 7.6e-31 139.0 411 39.2
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 9.9e-31 138.7 378 33.9
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 2.4e-24 117.5 201 45.3
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 9.0e-24 115.5 226 43.4
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.2e-20 105.1 206 40.3
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.3e-18 97.1 346 32.1
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 7.7e-15 85.9 144 43.8
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 2.3e-11 74.3 154 40.3


User provided reference genes

Program Settings