Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 8.4e-82 307.0 158 100.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 7.9e-72 273.9 157 89.2
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.3e-71 272.3 158 88.6
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 3.9e-71 271.6 158 88.0
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 5.1e-71 271.2 158 88.0
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 8.8e-71 270.4 158 87.3
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.5e-70 269.6 158 86.7
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 9.7e-70 266.9 158 86.7
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 9.7e-70 266.9 158 86.7
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 8.2e-69 263.8 156 86.5
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.1e-68 263.5 158 85.4
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 9.1e-68 260.4 156 85.9
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.5e-67 259.6 158 84.8
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.5e-67 259.6 158 83.5
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.5e-67 259.6 156 85.3
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 2.6e-67 258.8 147 90.5
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 2.6e-67 258.8 158 84.8
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 3.4e-67 258.5 158 84.2
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 5.9e-67 257.7 155 86.5
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 7.7e-67 257.3 158 82.3
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 6.5e-66 254.2 153 84.3
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.1e-65 253.4 158 81.0
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 2.5e-65 252.3 158 82.9
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 3.2e-65 251.9 153 83.7
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 5.5e-65 251.1 158 81.0
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 7.2e-65 250.8 158 81.0
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 9.4e-65 250.4 158 81.6
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 6.1e-64 247.7 156 82.7
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.8e-63 246.1 158 81.0
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 3.0e-63 245.4 159 80.5
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 8.8e-63 243.8 155 79.4
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.1e-62 243.4 159 81.1
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.1e-62 243.4 144 86.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 9.7e-62 240.4 156 80.1
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 4.8e-61 238.0 157 79.0
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 2.4e-60 235.7 155 80.0
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 4.1e-60 235.0 157 78.3
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.1e-60 235.0 159 78.6
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 7.0e-60 234.2 173 74.6
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.0e-60 234.2 159 78.0
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.0e-60 234.2 159 78.0
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 9.1e-60 233.8 157 79.6
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 3.5e-59 231.9 155 78.1
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 7.7e-59 230.7 157 74.5
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 1.5e-57 226.5 163 76.1
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 2.5e-57 225.7 157 74.5
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 9.4e-57 223.8 155 76.1
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.1e-56 222.6 157 72.6
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.7e-56 222.2 157 72.6
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.1e-56 221.1 159 74.8
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 6.1e-56 221.1 155 74.8
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 1.8e-55 219.5 223 56.5
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 4.0e-55 218.4 155 73.5
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 4.0e-55 218.4 155 73.5
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 4.0e-55 218.4 155 73.5
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 4.0e-55 218.4 157 73.2
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.8e-55 217.2 155 72.9
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-54 216.9 155 72.9
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 1.5e-54 216.5 157 73.9
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.0e-54 216.1 155 73.5
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 5.7e-54 214.5 159 69.2
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.5e-54 214.2 157 73.9
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 9.7e-54 213.8 201 61.2
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.3e-53 213.4 157 72.0
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 1.7e-53 213.0 155 71.6
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 6.3e-53 211.1 155 72.3
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.4e-52 209.9 155 71.0
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 2.4e-52 209.1 129 83.7
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.1e-52 208.8 157 69.4
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.1e-52 208.8 157 69.4
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.1e-52 208.8 155 70.3
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 9.1e-52 207.2 185 63.8
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 9.1e-52 207.2 155 72.3
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-51 205.7 157 68.8
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.0e-50 203.8 159 71.1
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.3e-50 203.4 155 68.4
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.7e-50 203.0 158 68.4
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.8e-50 201.8 159 70.4
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 5.0e-50 201.4 155 71.0
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 8.5e-50 200.7 157 68.8
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.1e-49 200.3 155 69.0
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.1e-49 200.3 160 68.1
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.5e-49 199.9 143 74.8
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.9e-49 199.5 155 71.0
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 4.2e-49 198.4 155 70.3
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 7.2e-49 197.6 155 69.7
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 7.2e-49 197.6 153 69.3
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 9.4e-49 197.2 157 65.0
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 2.1e-48 196.1 155 70.3
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.1e-48 196.1 153 67.3
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 2.7e-48 195.7 155 67.7
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.4e-47 193.4 157 66.2
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 6.8e-47 191.0 158 65.2
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.8e-47 191.0 154 66.9
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.8e-47 190.7 154 66.9
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.2e-46 190.3 157 66.9
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 2.6e-46 189.1 157 65.0
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 4.4e-46 188.3 270 46.7
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.7e-46 188.0 154 64.3
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 5.7e-46 188.0 152 63.8
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 5.7e-46 188.0 157 65.0
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 5.7e-46 188.0 152 66.4
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 9.8e-46 187.2 156 69.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.8e-45 185.7 157 64.3
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.3e-45 184.1 159 66.0
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 3.1e-44 182.2 158 62.7
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 3.1e-44 182.2 156 66.0
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.1e-44 182.2 157 59.2
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 5.4e-44 181.4 146 68.5
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 5.4e-44 181.4 146 68.5
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 5.4e-44 181.4 159 64.2
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 9.1e-44 180.6 123 77.2
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.6e-43 179.9 185 56.8
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-42 177.2 167 62.9
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.9e-42 175.6 155 61.3
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.8e-42 175.3 155 60.0
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.5e-41 173.3 125 73.6
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 9.5e-41 170.6 133 71.4
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.2e-40 170.2 155 58.7
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.2e-40 170.2 155 59.4
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.7e-40 169.1 151 60.3
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.6e-40 168.7 159 61.6
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 6.1e-40 167.9 97 86.6
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.0e-39 167.2 177 55.9
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.0e-39 167.2 164 59.1
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.2e-38 163.7 155 56.1
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.5e-38 163.3 155 58.1
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.5e-38 163.3 155 58.1
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.5e-38 163.3 155 58.1
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.5e-38 163.3 155 57.4
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 2.6e-38 162.5 157 58.6
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.4e-38 162.2 153 60.1
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 5.7e-38 161.4 156 57.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 5.7e-38 161.4 114 71.9
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.3e-37 160.2 124 68.5
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.2e-37 159.5 93 86.0
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.9e-37 158.3 93 83.9
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.1e-36 157.1 141 61.0
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.4e-36 156.8 116 70.7
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.8e-36 156.4 156 59.6
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.2e-35 153.7 148 56.1
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.7e-35 152.5 158 57.0
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.5e-35 152.1 156 53.8
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 5.9e-35 151.4 154 59.1
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-34 149.8 95 82.1
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 2.3e-34 149.4 122 65.6
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 8.6e-34 147.5 152 56.6
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 8.6e-34 147.5 98 75.5
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 2.5e-33 146.0 158 58.9
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 4.3e-33 145.2 178 51.7
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 9.5e-33 144.1 119 67.2
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-32 143.3 96 76.0
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.1e-32 142.9 143 56.6
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.2e-30 137.1 147 54.4
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.6e-30 136.0 125 56.8
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.9e-29 132.5 102 65.7
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 8.3e-29 131.0 155 48.4
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 1.8e-28 129.8 93 73.1
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 7.0e-28 127.9 94 71.3
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.2e-27 127.1 144 54.9
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.3e-26 122.9 170 46.5
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.6e-26 121.3 92 68.5
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 4.0e-23 112.1 91 68.1
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 4.9e-21 105.1 85 67.1
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.7e-19 99.4 91 64.8
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 4.6e-19 98.6 75 65.3
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 1.9e-17 93.2 83 53.0
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.5e-17 92.8 91 59.3
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 6.8e-15 84.7 61 68.9
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 3.7e-13 79.0 88 53.4
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-11 73.9 62 58.1
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.5e-11 72.4 67 53.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.6e-11 72.0 46 71.7
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.6e-11 72.0 62 58.1
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 3.0e-10 69.3 62 61.3
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 6.6e-10 68.2 95 45.3
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 5.6e-09 65.1 86 44.2
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 5.6e-09 65.1 144 36.8
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 3.6e-08 62.4 41 73.2
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.2e-08 61.6 87 41.4
QL09p049090 Quercus lobata HOM05D005758 ORTHO05D007218 3.1e-07 59.3 36 86.1


User provided reference genes

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