Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 0.0e+00 1736.5 979 100.0
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 4.1e-259 898.7 1033 58.5
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 5.7e-245 851.7 1034 56.2
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 3.2e-240 835.9 1033 56.7
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 1.9e-115 421.4 980 39.5
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 7.5e-104 382.9 1000 38.4
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 7.3e-91 339.7 1006 36.2
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 1.2e-88 332.4 839 36.8
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 8.3e-87 326.2 981 34.6
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 1.1e-86 325.9 1009 35.7
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 7.8e-85 319.7 998 37.8
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 1.0e-84 319.3 1027 35.1
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 1.1e-83 315.8 990 36.1
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.3e-83 314.3 998 37.5
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 4.7e-82 310.5 998 37.4
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 2.3e-81 308.1 998 36.5
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.0e-80 305.1 998 36.9
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 8.6e-76 289.7 1049 35.1
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 2.1e-74 285.0 1001 33.0
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 2.6e-72 278.1 955 35.8
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 2.1e-61 241.9 1082 31.1
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 2.1e-61 241.9 689 39.5
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.6e-56 224.9 758 35.0
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 2.4e-54 218.4 941 32.8
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 4.6e-53 214.2 1029 30.8
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 4.6e-53 214.2 802 30.8
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 1.1e-51 209.5 1119 30.9
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.9e-51 208.8 645 34.9
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 8.2e-50 203.4 726 33.9
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 7.6e-48 196.8 1030 30.6
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 3.8e-47 194.5 1106 29.1
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 3.2e-46 191.4 511 41.1
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 7.1e-46 190.3 991 30.7
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 2.3e-44 185.3 745 33.0
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.3e-43 181.4 1030 30.4
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 9.7e-43 179.9 736 31.5
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 1.4e-41 176.0 652 34.0
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 2.4e-41 175.3 1047 30.6
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 3.1e-41 174.9 1046 30.2
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 1.0e-39 169.9 967 28.9
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 1.3e-39 169.5 654 35.9
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 2.2e-39 168.7 788 31.1
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 8.5e-39 166.8 572 34.6
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 1.9e-38 165.6 830 31.6
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 4.2e-38 164.5 980 27.7
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 5.5e-38 164.1 997 30.3
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 1.5e-35 156.0 437 38.2
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 3.1e-33 148.3 374 46.5
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 4.1e-33 147.9 1029 27.6
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 4.5e-32 144.4 965 29.3
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 1.0e-31 143.3 479 39.2
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 1.7e-31 142.5 624 32.5
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 5.0e-31 141.0 704 30.5
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 1.4e-30 139.4 996 28.0
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 9.4e-30 136.7 600 31.0
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 1.4e-28 132.9 976 26.2
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 1.8e-28 132.5 639 35.7
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 3.3e-27 128.3 715 26.9
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 3.3e-27 128.3 990 27.6
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 4.4e-27 127.9 659 29.9
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 1.3e-26 126.3 695 33.1
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 6.3e-26 124.0 571 33.5
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 1.4e-25 122.9 978 27.2
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 3.1e-25 121.7 760 28.8
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 1.5e-24 119.4 1015 27.1
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 2.0e-24 119.0 634 29.3
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 4.5e-24 117.9 527 31.5
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.2e-22 111.3 717 29.4
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.4e-20 106.3 490 32.0
Medtr3g053340 Medicago truncatula HOM05D006920 ORTHO05D005895 1.5e-19 102.8 964 26.8
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 9.7e-19 100.1 492 35.0
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 1.1e-17 96.7 623 26.6
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 1.1e-17 96.7 359 28.7
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 2.6e-16 92.0 602 25.7
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 2.6e-16 92.0 280 41.8
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 3.5e-16 91.7 405 35.3
CSS0039023 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 5.9e-16 90.9 574 25.4
CSS0014816 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 1.3e-15 89.7 577 25.3
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 1.3e-15 89.7 687 28.5
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 1.3e-15 89.7 482 28.8
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 2.2e-15 89.0 389 34.4
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 2.9e-15 88.6 626 29.4
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.5e-14 86.3 56 69.6
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 2.5e-14 85.5 348 35.3
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 4.2e-14 84.7 110 42.7
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 9.4e-14 83.6 73 52.1
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 9.4e-14 83.6 129 43.4
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 2.1e-13 82.4 54 66.7
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 6.1e-13 80.9 147 39.5
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 1.0e-12 80.1 81 72.8
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 1.8e-12 79.3 508 29.9
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 2.3e-12 79.0 179 50.3
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 2.3e-12 79.0 80 71.2
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 3.0e-12 78.6 919 26.7
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 4.0e-12 78.2 435 29.4
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 6.7e-12 77.4 97 43.3
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 8.8e-12 77.0 327 30.3
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 8.8e-12 77.0 530 32.3
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 1.5e-11 76.3 346 30.1
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 1.5e-11 76.3 346 30.1
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 1.5e-11 76.3 346 30.1
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.0e-11 75.9 397 28.5
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 2.0e-11 75.9 554 25.6
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 4.4e-11 74.7 114 44.7
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 9.7e-11 73.6 564 31.2
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 9.7e-11 73.6 67 59.7
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 1.3e-10 73.2 421 29.5
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 2.2e-10 72.4 385 33.5
Cpa.g.sc28.161 Carica papaya HOM05D006920 ORTHO05D005895 2.8e-10 72.0 379 24.8
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 1.1e-09 70.1 274 27.4
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 1.4e-09 69.7 424 32.5
Pp3c19_22680 Physcomitrium patens HOM05D006920 ORTHO05D005895 3.1e-09 68.6 100 42.0
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 3.1e-09 68.6 690 26.1
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 4.1e-09 68.2 53 58.5
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 2.7e-08 65.5 355 27.3
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 5.9e-08 64.3 141 32.6
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 5.9e-08 64.3 430 28.1
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 5.0e-07 61.2 49 61.2
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 5.0e-07 61.2 49 61.2
AagrBONN_evm.TU.Sc2ySwM_228.2245 Anthoceros agrestis HOM05D006920 ORTHO05D005895 2.5e-06 58.9 56 50.0
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 9.4e-06 57.0 292 26.7


User provided reference genes

Program Settings