Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 7.9e-111 403.7 189 100.0
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 5.9e-90 334.3 188 80.9
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 5.9e-90 334.3 189 80.4
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 3.8e-89 331.6 188 78.2
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 1.5e-85 319.7 189 77.8
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 3.4e-85 318.5 190 77.9
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 2.2e-84 315.8 186 75.3
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 6.3e-84 314.3 190 73.2
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.4e-83 313.2 189 74.6
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.4e-83 313.2 189 74.6
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.4e-83 312.4 189 74.6
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.1e-83 311.6 188 75.5
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 9.1e-83 310.5 186 75.8
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.2e-82 310.1 189 75.7
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.6e-82 309.7 189 75.7
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 3.5e-82 308.5 189 74.6
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 5.9e-82 307.8 189 75.7
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 7.7e-82 307.4 190 74.2
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 1.3e-81 306.6 190 70.5
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 2.9e-81 305.4 188 72.3
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 3.8e-81 305.1 189 72.5
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 6.6e-81 304.3 190 70.5
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 6.6e-81 304.3 190 69.5
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 8.6e-81 303.9 190 72.6
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 8.6e-81 303.9 190 73.7
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.5e-80 303.1 189 74.1
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.5e-80 303.1 188 72.9
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.5e-80 303.1 188 72.9
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 1.9e-80 302.8 186 72.6
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 2.5e-80 302.4 191 70.7
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 4.2e-80 301.6 189 70.9
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 4.2e-80 301.6 187 72.7
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 5.5e-80 301.2 191 70.2
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 7.2e-80 300.8 190 71.1
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 7.2e-80 300.8 187 72.7
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 7.2e-80 300.8 187 72.2
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 9.5e-80 300.4 187 72.2
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 9.5e-80 300.4 187 72.2
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.2e-79 300.1 190 72.6
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 3.6e-79 298.5 187 73.8
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 4.7e-79 298.1 190 71.1
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 4.7e-79 298.1 190 70.5
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 6.1e-79 297.7 191 71.2
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 6.1e-79 297.7 189 70.9
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 8.0e-79 297.4 189 72.5
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 1.0e-78 297.0 184 72.8
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.0e-78 297.0 184 72.8
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.4e-78 296.6 205 68.8
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.4e-78 296.6 189 71.4
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 1.4e-78 296.6 187 71.1
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.4e-78 296.6 185 71.4
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 2.3e-78 295.8 189 69.8
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 3.0e-78 295.4 187 72.2
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 6.8e-78 294.3 187 70.6
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 8.9e-78 293.9 189 70.4
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 1.5e-77 293.1 188 71.8
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 1.5e-77 293.1 185 73.0
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.0e-77 292.7 187 71.1
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 2.6e-77 292.4 188 70.7
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 4.4e-77 291.6 190 70.5
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.4e-77 291.6 189 71.4
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 7.5e-77 290.8 187 72.2
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 9.8e-77 290.4 184 72.3
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.3e-76 290.0 188 71.3
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 1.7e-76 289.7 187 70.1
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 2.8e-76 288.9 187 67.9
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 1.4e-75 286.6 190 68.9
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 1.8e-75 286.2 190 68.9
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.8e-75 286.2 186 68.3
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 3.1e-75 285.4 190 70.0
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 4.1e-75 285.0 190 69.5
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 9.2e-75 283.9 188 68.6
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 1.2e-74 283.5 186 68.3
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 1.2e-74 283.5 189 67.2
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 1.2e-74 283.5 219 62.6
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 2.0e-74 282.7 187 69.0
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 3.5e-74 282.0 189 65.6
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 1.7e-73 279.6 189 66.1
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 2.3e-73 279.3 187 67.9
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 5.0e-73 278.1 188 67.6
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 6.6e-73 277.7 192 66.7
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 6.6e-73 277.7 188 65.4
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 4.3e-72 275.0 227 59.0
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 5.6e-72 274.6 190 65.8
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 5.6e-72 274.6 190 65.8
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 1.2e-71 273.5 190 65.3
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 2.1e-71 272.7 187 65.2
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 2.8e-71 272.3 182 65.9
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 3.6e-71 271.9 190 64.7
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 3.6e-71 271.9 190 64.7
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.3e-70 269.2 190 65.8
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 3.1e-70 268.9 191 64.4
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.2e-69 266.9 189 67.2
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 2.0e-69 266.2 190 65.8
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 5.8e-69 264.6 189 62.4
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-68 263.5 191 65.4
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.9e-68 262.3 148 79.1
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 8.3e-68 260.8 189 61.4
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 9.2e-67 257.3 187 63.6
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.2e-66 256.9 189 60.8
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 4.3e-64 248.4 189 61.9
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 1.8e-62 243.0 187 62.0
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 2.3e-62 242.7 184 59.8
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.3e-62 242.7 184 60.3
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 2.3e-62 242.7 184 62.0
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 3.1e-62 242.3 149 73.2
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 6.8e-62 241.1 187 60.4
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.2e-61 240.4 189 61.9
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 1.5e-61 240.0 187 59.4
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 5.8e-61 238.0 189 63.5
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 7.5e-61 237.7 176 64.8
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 5.4e-59 231.5 179 62.6
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.7e-58 229.2 189 57.1
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 1.0e-57 227.3 188 56.9
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 1.1e-56 223.8 181 58.6
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.9e-56 223.0 191 58.1
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 1.4e-54 216.9 187 54.5
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 5.2e-54 214.9 185 55.7
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.4e-53 211.8 135 70.4
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 4.6e-34 148.7 111 62.2
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.3e-33 146.4 84 78.6
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 1.3e-31 140.6 82 76.8
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 6.2e-31 138.3 109 55.0
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.4e-27 127.1 99 63.6
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 7.6e-21 104.8 120 45.8
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.5e-16 90.5 95 48.4
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 2.7e-10 69.7 78 46.2
PRCOL_00002298 Prasinoderma coloniale HOM05D006185 ORTHO05D007572 4.3e-08 62.4 194 27.3


User provided reference genes

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