Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.0e-204 714.5 356 100.0
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.4e-169 599.0 352 84.9
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 6.0e-168 594.3 351 84.9
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.9e-167 591.7 353 84.1
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.1e-165 585.9 355 83.7
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.0e-164 581.6 355 81.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 4.0e-164 581.6 350 83.7
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.2e-163 580.1 350 83.4
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.2e-163 580.1 355 82.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 4.4e-163 578.2 351 82.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.8e-163 577.8 350 83.7
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 9.9e-163 577.0 350 82.6
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.2e-162 575.9 350 83.4
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.9e-162 575.5 355 82.0
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.7e-162 575.1 354 79.1
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 4.9e-162 574.7 350 82.9
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.4e-161 573.2 352 81.8
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 4.1e-161 571.6 352 81.5
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 5.4e-161 571.2 355 80.0
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.2e-161 570.5 352 81.5
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 2.7e-160 568.9 355 81.7
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.7e-160 568.9 355 81.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.7e-160 568.9 354 79.9
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.0e-159 567.0 353 81.6
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-158 563.5 355 80.8
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.9e-158 562.8 352 80.7
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 3.3e-158 562.0 351 78.9
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.6e-157 559.7 351 78.9
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 3.1e-156 555.4 351 78.6
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.2e-155 553.5 351 78.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.2e-155 553.5 354 79.4
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.2e-155 553.5 353 78.8
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 2.6e-155 552.4 348 80.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.3e-154 550.1 331 83.7
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.9e-154 548.9 351 77.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 3.8e-154 548.5 379 74.7
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.4e-153 546.6 358 76.8
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.4e-153 546.6 350 78.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.4e-153 545.8 328 83.2
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 4.2e-153 545.0 367 75.7
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 7.1e-153 544.3 350 78.6
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 7.1e-153 544.3 353 77.9
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.1e-152 542.7 326 84.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 7.8e-152 540.8 353 77.9
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.7e-151 539.7 363 75.5
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.3e-151 539.3 352 76.1
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.0e-151 538.9 358 75.1
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 6.6e-151 537.7 352 77.0
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 6.6e-151 537.7 353 75.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.5e-150 535.8 356 75.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 3.3e-150 535.4 356 75.3
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.3e-150 535.4 352 75.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.3e-150 535.4 356 76.7
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 4.3e-150 535.0 357 75.6
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 9.6e-150 533.9 356 75.6
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.8e-149 532.3 354 75.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 3.6e-149 531.9 330 79.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.2e-149 531.2 352 75.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 6.2e-149 531.2 351 77.5
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.4e-148 529.3 307 86.3
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 5.3e-148 528.1 353 74.2
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.5e-147 526.6 346 76.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.4e-147 525.4 352 75.0
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 5.8e-147 524.6 354 75.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 9.9e-147 523.9 353 75.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.2e-145 518.8 354 74.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.4e-145 518.1 405 67.7
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 9.3e-145 517.3 387 69.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.0e-144 514.6 346 75.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.9e-144 514.2 353 74.2
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 5.1e-143 511.5 354 73.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 5.1e-143 511.5 325 78.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.6e-143 511.1 330 76.1
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.9e-142 509.6 355 73.2
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-142 509.2 333 76.6
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.1e-141 506.1 326 75.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.8e-141 505.8 328 75.9
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.8e-141 505.0 356 72.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.0e-140 501.9 351 72.9
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.3e-138 496.9 331 73.7
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-137 493.4 330 73.0
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.4e-137 492.7 327 76.1
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 2.4e-137 492.7 337 71.8
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.2e-137 492.3 342 72.2
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.2e-137 492.3 376 66.8
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 7.1e-137 491.1 350 72.9
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 7.1e-137 491.1 341 74.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-136 490.0 330 75.2
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 2.1e-136 489.6 326 72.7
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.7e-136 489.2 325 75.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-135 486.9 347 72.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.9e-135 485.3 345 72.2
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 6.7e-135 484.6 326 73.9
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 8.7e-135 484.2 337 73.6
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.1e-134 483.8 345 69.6
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.3e-134 482.3 343 69.1
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.3e-134 481.9 325 74.2
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 9.6e-134 480.7 344 69.2
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 9.6e-134 480.7 343 70.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 9.6e-134 480.7 351 69.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.8e-133 479.2 331 71.6
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 4.8e-133 478.4 345 69.6
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 6.2e-133 478.0 344 68.9
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 8.1e-133 477.6 344 68.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.1e-132 477.2 367 66.5
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.4e-132 476.9 327 70.9
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.4e-132 476.1 325 72.9
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 2.4e-132 476.1 350 68.0
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 5.3e-132 474.9 327 71.6
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 9.0e-132 474.2 327 71.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 9.0e-132 474.2 325 71.4
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.2e-131 473.8 351 69.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.6e-131 472.6 343 68.5
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.8e-131 471.5 341 71.0
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-130 469.5 307 75.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.5e-130 468.0 364 67.0
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.1e-129 467.2 325 72.3
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 1.9e-129 466.5 304 77.3
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.5e-128 462.2 359 66.0
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 4.6e-128 461.8 267 85.8
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.1e-127 458.4 338 66.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.1e-126 457.2 327 70.0
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.3e-126 455.7 307 73.9
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.1e-125 453.0 348 66.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 2.8e-125 452.6 331 67.7
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.4e-124 450.3 278 83.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.5e-123 446.8 350 66.9
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.6e-120 436.8 291 79.0
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 3.0e-119 432.6 527 47.8
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.7e-117 425.6 268 80.6
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.4e-105 387.1 348 59.5
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.6e-104 383.6 353 56.4
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.7e-101 372.5 226 81.0
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.5e-97 360.5 336 55.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.6e-94 349.7 243 72.0
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 6.3e-93 345.1 280 65.4
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.5e-91 339.0 206 81.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.1e-89 334.3 300 56.0
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.1e-88 330.1 231 71.4
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.0e-87 325.9 188 85.1
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.2e-85 320.1 203 79.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.1e-84 317.8 266 63.5
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.6e-83 313.9 233 67.8
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 8.8e-79 298.1 163 91.4
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.1e-68 262.7 390 40.5
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.3e-61 241.1 190 66.3
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.7e-61 240.7 188 64.4
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.6e-59 234.2 214 58.4
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.6e-59 232.6 161 70.2
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-56 224.6 165 69.7
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 2.9e-53 213.4 273 45.8
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.1e-51 207.2 196 59.2
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 5.1e-50 202.6 147 70.1
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 7.3e-49 198.7 329 40.7
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 4.4e-38 162.9 116 74.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.8e-31 141.0 167 50.9
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.5e-27 126.7 71 88.7
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.0e-26 125.2 352 31.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.3e-26 124.8 222 36.9
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 5.1e-26 122.9 305 32.1
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.8e-23 114.4 206 36.9
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 4.5e-22 109.8 67 77.6
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.2e-20 103.6 60 86.7
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.2e-20 103.6 63 79.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.3e-18 98.2 57 80.7
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.3e-17 93.6 92 54.3
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-11 75.1 60 58.3
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 2.1e-11 74.3 81 53.1
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 8.7e-10 68.9 34 88.2


User provided reference genes

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