Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 0.0e+00 1167.1 689 100.0
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 6.5e-203 711.4 738 64.1
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 7.0e-189 664.8 711 63.6
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 5.0e-187 658.7 735 60.5
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 1.2e-135 488.0 694 52.4
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 1.3e-134 484.6 704 49.9
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 9.6e-130 468.4 713 49.8
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.2e-129 468.0 785 47.6
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.5e-127 461.1 436 58.7
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 2.0e-127 460.7 723 49.8
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 2.9e-126 456.8 720 50.7
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 3.5e-116 423.3 718 46.8
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.0e-115 421.8 723 43.6
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 5.1e-115 419.5 729 47.3
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 8.7e-115 418.7 779 41.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.9e-114 417.5 439 54.7
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.9e-114 417.5 435 54.7
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 4.3e-114 416.4 439 54.0
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 3.7e-113 413.3 428 56.3
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 6.2e-113 412.5 755 44.8
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 1.1e-112 411.8 439 54.4
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.4e-112 411.4 441 55.8
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.8e-112 411.0 773 42.8
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 2.4e-112 410.6 718 51.3
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.0e-111 407.5 439 53.5
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.6e-111 407.1 740 47.7
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.6e-111 407.1 740 47.7
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 4.5e-111 406.4 440 55.2
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 1.5e-103 381.3 639 48.2
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 1.1e-101 375.2 455 51.6
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 1.4e-101 374.8 444 53.2
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.5e-100 370.2 444 51.8
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.3e-99 367.5 432 53.7
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 3.9e-99 366.7 746 43.8
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.9e-99 366.7 745 44.7
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.3e-98 363.2 752 42.6
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 7.4e-98 362.5 782 41.8
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.2e-97 360.9 486 46.5
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 4.8e-97 359.8 467 49.7
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.8e-96 357.8 737 43.0
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 6.9e-96 355.9 823 41.9
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 5.9e-95 352.8 751 43.9
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 2.9e-94 350.5 426 51.4
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 1.2e-92 345.1 413 50.8
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 6.7e-91 339.3 431 50.6
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.1e-90 338.6 415 50.6
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 5.7e-90 336.3 410 50.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 6.3e-89 332.8 706 41.5
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 6.9e-88 329.3 408 49.8
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.0e-87 327.8 428 48.8
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 2.6e-87 327.4 429 49.4
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 5.9e-87 326.2 422 50.5
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 5.9e-87 326.2 410 49.5
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.2e-86 324.3 406 49.8
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 6.5e-86 322.8 436 47.0
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.1e-85 322.0 380 52.1
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 3.2e-85 320.5 418 49.8
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 5.5e-85 319.7 421 50.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 7.2e-85 319.3 408 48.3
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.2e-84 318.5 517 44.7
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 3.6e-84 317.0 417 47.7
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.4e-82 310.1 432 46.5
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 5.7e-82 309.7 417 47.5
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.7e-81 308.1 415 49.4
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 2.8e-81 307.4 409 47.4
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 4.1e-80 303.5 471 43.5
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 9.1e-80 302.4 736 44.2
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.6e-79 300.8 466 44.8
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 2.6e-79 300.8 478 42.5
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 1.1e-77 295.4 414 48.3
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.5e-77 294.3 441 44.9
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 2.7e-76 290.8 410 45.1
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.7e-76 290.8 452 44.9
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 6.1e-76 289.7 424 45.0
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.8e-75 288.1 346 50.6
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 3.0e-75 287.3 746 40.2
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 3.9e-75 287.0 404 48.8
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 3.9e-75 287.0 476 41.8
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 6.7e-75 286.2 442 46.6
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 8.8e-75 285.8 624 44.4
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 5.7e-74 283.1 430 45.6
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 4.8e-73 280.0 430 45.6
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 2.4e-72 277.7 350 49.1
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.6e-71 274.2 428 45.3
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 3.5e-71 273.9 447 44.3
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 3.2e-69 267.3 376 46.5
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 3.2e-69 267.3 376 46.5
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 2.7e-68 264.2 429 43.4
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 3.6e-68 263.8 301 53.2
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 8.0e-68 262.7 893 35.5
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.0e-67 262.3 450 42.9
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 4.0e-67 260.4 379 46.7
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.0e-66 258.1 476 41.6
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.6e-66 257.7 391 44.8
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 4.4e-66 256.9 414 42.5
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 4.4e-66 256.9 422 44.8
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.3e-65 255.4 380 45.8
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.3e-65 255.4 367 48.2
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 3.7e-65 253.8 382 45.0
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.8e-64 251.5 414 43.2
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 3.1e-64 250.8 362 46.4
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 1.2e-63 248.8 201 64.7
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 1.6e-63 248.4 411 44.5
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 3.5e-63 247.3 357 45.7
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 1.2e-60 238.8 527 37.8
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 2.3e-59 234.6 366 41.8
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 3.0e-59 234.2 443 40.6
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 5.2e-59 233.4 177 66.7
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.5e-58 231.9 172 66.9
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.5e-58 231.9 172 66.9
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 2.6e-58 231.1 432 41.2
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 5.7e-58 229.9 333 43.5
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 9.8e-58 229.2 368 42.1
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.7e-57 228.4 415 40.2
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 4.8e-57 226.9 314 46.8
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 4.1e-56 223.8 453 37.5
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 7.0e-56 223.0 348 43.7
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.6e-55 221.9 359 42.3
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 1.6e-55 221.9 359 42.6
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 2.0e-55 221.5 456 38.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 2.7e-55 221.1 352 42.6
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 7.7e-55 219.5 171 65.5
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 2.5e-53 214.5 454 37.4
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 4.2e-53 213.8 173 59.5
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 7.2e-53 213.0 360 41.9
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 4.7e-52 210.3 149 70.5
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 2.0e-50 204.9 182 56.6
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 3.7e-49 200.7 282 44.0
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.8e-48 198.4 130 73.1
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 5.4e-48 196.8 350 40.0
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 7.8e-47 193.0 441 36.5
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 1.5e-42 178.7 154 58.4
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 4.9e-41 173.7 164 53.7
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 5.4e-40 170.2 290 41.4
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.7e-38 165.2 136 55.9
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.3e-37 161.0 138 58.0
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 4.7e-36 157.1 160 52.5
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 4.4e-34 150.6 144 52.8
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.9e-32 145.2 136 54.4
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 6.0e-31 140.2 285 34.7
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.8e-28 131.3 314 35.0
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 2.9e-25 121.3 80 73.8
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 2.4e-24 118.2 80 72.5
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 2.3e-22 111.7 96 59.4
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 6.0e-15 87.0 71 59.2
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 3.9e-14 84.3 119 35.3
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 1.1e-13 82.8 60 63.3
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 6.9e-11 73.6 158 31.6
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 2.1e-07 62.0 100 37.0
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 4.6e-07 60.8 44 63.6


User provided reference genes

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