Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 7.0e-251 870.2 442 100.0
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.8e-189 664.5 443 76.1
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 2.9e-188 662.1 439 77.2
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.1e-182 642.1 422 76.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 7.4e-152 541.2 444 64.0
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.4e-150 537.0 430 64.9
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.8e-150 536.6 442 65.8
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 3.1e-150 535.8 438 64.6
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 3.8e-148 528.9 436 61.7
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 3.4e-144 515.8 439 63.6
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 9.7e-144 514.2 443 60.9
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.7e-143 513.5 437 60.9
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.7e-141 506.1 432 60.6
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.3e-140 503.8 439 61.7
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.3e-140 503.8 439 61.7
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.3e-140 503.8 432 60.6
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.9e-139 500.0 432 60.0
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.0e-137 494.2 434 60.6
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.0e-137 494.2 442 57.5
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 3.0e-137 492.7 466 56.4
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 8.3e-135 484.6 418 59.3
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.1e-134 482.3 437 57.2
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.0e-133 479.9 434 58.8
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.7e-132 476.9 495 52.7
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.5e-131 473.8 437 58.1
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.9e-131 473.4 455 55.8
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.2e-131 472.2 428 58.6
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 9.5e-131 471.1 443 56.9
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 3.6e-130 469.2 434 57.8
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.0e-128 463.4 490 51.0
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 2.0e-128 463.4 447 57.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.3e-127 460.7 422 55.2
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.7e-127 459.1 437 56.1
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 8.3e-127 458.0 444 54.5
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.4e-126 457.2 435 55.9
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.7e-125 453.0 434 57.8
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.5e-125 452.6 488 51.6
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 2.9e-124 449.5 446 55.2
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 3.9e-124 449.1 436 55.5
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 5.0e-124 448.7 452 55.8
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.6e-124 448.4 449 54.3
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.5e-123 447.2 446 54.9
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 7.3e-123 444.9 444 52.7
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.8e-121 440.3 439 53.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 8.9e-121 438.0 449 54.1
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 2.6e-120 436.4 412 57.3
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.6e-120 436.4 451 53.9
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 4.4e-120 435.6 452 52.7
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 9.8e-120 434.5 444 53.2
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 9.8e-120 434.5 461 53.1
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 9.8e-120 434.5 429 55.9
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.3e-119 434.1 434 52.3
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.7e-119 433.7 438 52.7
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.7e-119 433.7 448 53.8
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 8.3e-119 431.4 441 54.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 8.3e-119 431.4 421 55.6
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 4.1e-118 429.1 449 53.2
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 7.0e-118 428.3 432 53.2
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.5e-117 426.0 453 51.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 7.8e-117 424.9 445 53.0
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.0e-116 424.5 454 51.1
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.0e-116 424.5 458 52.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.7e-116 423.7 438 53.2
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.3e-116 423.3 479 50.9
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.1e-115 421.0 454 51.3
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 7.3e-115 418.3 432 54.9
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 9.5e-115 417.9 462 50.4
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 9.5e-115 417.9 471 50.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.2e-114 417.5 442 53.6
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.1e-113 414.5 443 50.8
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.8e-113 413.7 449 54.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.2e-112 411.0 444 51.6
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.6e-112 409.8 451 51.2
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.7e-111 407.1 436 51.4
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 2.9e-111 406.4 443 51.2
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 3.7e-111 406.0 378 57.7
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-110 403.7 443 51.0
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.1e-110 401.7 437 51.5
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.2e-109 401.0 473 47.8
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 7.8e-109 398.3 436 50.9
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.9e-107 393.7 431 48.3
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.3e-105 386.7 439 48.5
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.2e-103 380.2 482 45.9
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 4.1e-102 375.9 439 47.8
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 7.1e-102 375.2 446 48.2
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 4.6e-101 372.5 280 70.7
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 2.3e-100 370.2 320 62.8
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 9.6e-99 364.8 486 43.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.6e-98 364.0 441 47.6
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 2.1e-98 363.6 444 47.3
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.3e-95 354.4 434 46.1
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 9.3e-94 348.2 435 43.4
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 7.8e-93 345.1 425 43.3
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 1.3e-92 344.4 441 43.3
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.2e-88 331.3 439 42.8
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.0e-88 330.5 352 54.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.6e-88 330.1 430 43.0
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.9e-87 326.6 422 42.2
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.8e-87 326.2 430 42.3
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 6.4e-87 325.5 430 42.3
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 6.4e-87 325.5 430 42.1
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 6.4e-87 325.5 430 42.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.9e-86 323.9 427 41.9
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.5e-83 313.5 431 40.6
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.6e-80 303.5 425 40.2
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.7e-79 300.8 437 40.5
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.5e-75 287.7 435 38.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.8e-74 283.5 240 58.3
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.4e-73 280.4 438 39.5
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.3e-68 264.6 266 56.4
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.3e-63 248.1 262 54.2
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.9e-62 244.2 172 66.9
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.2e-62 243.4 338 45.3
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.5e-62 242.7 171 67.3
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.9e-60 236.5 288 50.3
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.7e-60 235.7 275 52.0
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.8e-58 229.6 435 34.3
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 5.0e-55 219.5 270 46.3
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.9e-47 193.7 237 42.6
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 4.2e-46 189.9 145 64.1
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.1e-45 187.6 298 38.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 5.1e-44 183.0 284 39.8
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.8e-41 174.5 299 38.8
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 3.2e-38 163.7 356 32.0
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.3e-36 157.5 280 34.6
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.5e-35 154.8 280 34.6
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 9.7e-35 152.1 231 37.7
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 8.2e-34 149.1 131 55.0
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.5e-30 137.5 200 42.5
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.6e-29 134.8 274 33.6
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.6e-29 133.7 87 66.7
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.6e-29 133.7 87 66.7
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.4e-27 127.1 217 36.4
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.5e-24 116.7 111 56.8
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.5e-23 112.8 136 51.5
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.6e-21 108.2 296 27.4
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-17 95.5 321 26.2
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-14 85.5 268 28.0
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 4.7e-13 80.1 300 26.3
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 4.7e-13 80.1 300 26.3
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 4.7e-13 80.1 300 26.3
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.0e-12 79.0 300 25.7
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.0e-12 79.0 300 25.7
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 3.7e-10 70.5 55 58.2


User provided reference genes

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