Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 0.0e+00 1557.7 817 100.0
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 9.8e-41 172.9 297 44.1
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 9.8e-41 172.9 379 38.0
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.2e-35 156.0 367 37.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.3e-34 151.8 860 26.3
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.2e-34 150.6 397 34.5
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.0e-33 148.7 419 33.7
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.3e-32 146.0 398 34.2
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 8.4e-32 143.3 397 33.5
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.1e-31 142.9 365 36.4
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.0e-29 136.3 555 28.8
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.7e-27 127.5 211 43.1
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 8.1e-27 126.7 247 39.7
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 3.1e-26 124.8 529 28.9
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 5.2e-26 124.0 233 41.6
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.2e-25 122.9 357 34.7
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.6e-25 121.7 583 28.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.1e-23 116.3 456 32.0
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.3e-23 113.2 722 26.2
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.7e-21 109.0 355 31.3
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 6.6e-21 107.1 376 31.9
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.7e-21 106.7 724 25.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.1e-20 106.3 357 30.3
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.3e-20 104.8 890 25.6
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 4.3e-20 104.4 464 29.7
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 4.3e-20 104.4 298 32.6
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 7.3e-20 103.6 302 32.8
ECA238G1893 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.8e-19 101.7 661 26.2
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.8e-19 101.7 358 31.3
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.1e-19 100.1 476 26.9
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 8.1e-19 100.1 470 28.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.1e-19 100.1 173 43.4
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.1e-18 99.8 272 36.8
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.1e-18 99.8 177 40.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.8e-18 99.0 240 37.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.8e-18 99.0 314 32.8
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.8e-18 99.0 688 26.0
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.8e-18 99.0 828 25.7
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 3.1e-18 98.2 837 24.3
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 5.3e-18 97.4 417 29.5
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 6.9e-18 97.1 354 29.4
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 3.4e-17 94.7 354 30.5
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 5.8e-17 94.0 145 47.6
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.7e-16 92.4 368 28.8
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.4e-16 90.5 837 24.6
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 8.4e-16 90.1 118 43.2
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.4e-15 89.4 358 28.8
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.4e-15 88.6 172 39.5
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 2.4e-15 88.6 743 24.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.4e-15 88.6 461 27.1
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 7.1e-15 87.0 312 29.5
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-14 85.5 712 24.7
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.7e-14 85.1 178 38.2
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 5.1e-13 80.9 417 28.1
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 5.1e-13 80.9 291 31.3
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 6.7e-13 80.5 352 29.3
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 6.7e-13 80.5 316 28.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 8.7e-13 80.1 419 28.2
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.5e-12 79.3 328 28.7
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-12 79.3 268 31.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.5e-12 78.6 318 30.5
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.5e-12 78.6 318 30.5
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 5.6e-12 77.4 389 26.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 7.4e-12 77.0 318 29.9
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 7.4e-12 77.0 327 30.3
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 7.4e-12 77.0 378 26.7
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.6e-12 76.6 268 31.3
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 9.6e-12 76.6 319 26.3
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.3e-11 76.3 249 30.1
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.3e-11 76.3 341 27.9
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.8e-11 75.1 203 33.5
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 4.8e-11 74.3 823 24.1
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 4.8e-11 74.3 364 25.8
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 6.2e-11 73.9 335 28.1
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 8.1e-11 73.6 262 30.5
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.4e-10 72.8 277 27.1
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-10 72.0 810 23.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 4.0e-10 71.2 842 23.2
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 5.3e-10 70.9 326 30.1
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 5.3e-10 70.9 450 24.9
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 5.3e-10 70.9 398 27.6
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 9.0e-10 70.1 108 47.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.0e-09 68.9 371 25.9
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.0e-09 68.9 397 26.4
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.0e-09 68.9 356 27.5
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.6e-09 68.6 273 29.3
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.4e-09 68.2 370 29.2
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.4e-09 68.2 205 32.2
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 7.6e-09 67.0 325 26.8
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 7.6e-09 67.0 372 25.5
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.7e-08 65.9 810 24.0
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-08 65.5 323 28.2
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.9e-08 65.1 310 28.4
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 2.9e-08 65.1 118 35.6
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.9e-08 65.1 299 27.8
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.8e-08 64.7 251 30.3
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.8e-08 64.7 624 24.7
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.9e-08 64.3 447 26.4
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.9e-08 64.3 289 28.4
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 6.4e-08 63.9 282 27.7
TPR.G14317 Trifolium pratense HOM05D004189 ORTHO05D017062 6.4e-08 63.9 495 26.1
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 6.4e-08 63.9 617 24.0
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.1e-07 63.2 311 26.0
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.4e-07 62.8 428 25.7
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-07 62.4 365 26.6
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-07 62.0 441 26.5
MBI18_g09027_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 2.4e-07 62.0 301 26.2
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.2e-07 61.6 226 30.1
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 5.5e-07 60.8 168 33.3
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 9.3e-07 60.1 588 23.3
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 1.2e-06 59.7 155 34.2
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.2e-06 59.7 446 26.5
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.6e-06 59.3 630 24.4
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.6e-06 59.3 207 30.0
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 1.6e-06 59.3 180 32.2
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.1e-06 58.9 304 28.9
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 2.1e-06 58.9 215 30.2
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 2.1e-06 58.9 352 26.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.7e-06 58.5 491 24.6
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 3.5e-06 58.2 821 22.9
Solyc01g009660.3 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.5e-06 58.2 131 33.6
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 4.6e-06 57.8 287 30.0
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 4.6e-06 57.8 863 23.3


User provided reference genes

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