Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 1.6e-208 729.2 377 100.0
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 7.2e-172 607.4 377 82.8
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 4.0e-170 601.7 385 81.3
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 2.2e-165 585.9 376 79.5
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 4.0e-146 521.9 377 72.7
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 5.4e-143 511.5 377 69.2
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 2.0e-142 509.6 378 69.8
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 2.7e-142 509.2 380 69.5
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 3.5e-142 508.8 379 71.2
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 4.7e-139 498.4 377 70.0
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 8.9e-138 494.2 377 69.2
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 1.5e-137 493.4 377 67.6
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.4e-135 485.0 379 67.5
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 9.2e-135 484.2 379 67.8
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.2e-134 483.8 379 67.8
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 7.8e-134 481.1 381 66.4
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 3.0e-133 479.2 377 64.7
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 5.1e-133 478.4 377 66.8
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 8.6e-133 477.6 377 66.8
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 3.1e-130 469.2 378 65.1
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 3.1e-130 469.2 375 66.4
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 1.2e-129 467.2 377 64.2
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 7.6e-129 464.5 382 64.9
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 1.3e-128 463.8 377 65.3
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 1.3e-128 463.8 378 63.5
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 8.4e-128 461.1 377 64.7
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 8.4e-128 461.1 377 65.3
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 2.1e-126 456.4 377 63.1
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 3.5e-126 455.7 379 65.4
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 1.0e-125 454.1 377 61.0
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 1.3e-125 453.8 379 64.4
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 8.6e-125 451.1 378 63.8
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 1.1e-124 450.7 377 60.7
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 5.6e-124 448.4 377 61.3
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 9.6e-124 447.6 376 64.6
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 1.6e-123 446.8 377 61.0
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 1.6e-123 446.8 376 64.4
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.1e-123 446.4 377 60.7
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 2.4e-122 443.0 376 60.1
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 3.1e-122 442.6 377 62.3
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 4.0e-122 442.2 379 63.6
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 6.8e-122 441.4 377 63.1
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.5e-121 440.3 377 59.9
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 3.4e-121 439.1 377 63.4
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 5.8e-121 438.3 377 62.3
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 7.6e-121 438.0 377 62.3
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 2.2e-120 436.4 381 62.5
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 6.4e-120 434.9 378 62.7
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 8.4e-120 434.5 348 64.1
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 1.6e-118 430.3 377 62.6
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 6.0e-118 428.3 382 59.7
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.5e-116 423.7 383 60.8
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 4.3e-116 422.2 377 59.9
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 7.3e-116 421.4 379 61.2
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 7.3e-116 421.4 382 58.9
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 6.2e-115 418.3 379 61.2
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 5.3e-114 415.2 377 59.2
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 6.9e-114 414.8 377 57.6
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 1.4e-111 407.1 377 58.1
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 1.2e-110 404.1 377 56.8
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 2.1e-110 403.3 382 57.9
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 2.1e-110 403.3 379 56.7
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 1.0e-109 401.0 381 58.0
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 6.6e-109 398.3 401 56.4
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 6.6e-109 398.3 381 56.2
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 1.1e-108 397.5 381 58.0
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 5.6e-108 395.2 377 59.4
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 5.6e-108 395.2 381 57.7
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 5.6e-108 395.2 378 59.5
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 2.8e-107 392.9 381 55.9
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 2.8e-107 392.9 381 55.9
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 4.8e-107 392.1 384 56.5
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 5.3e-106 388.7 324 65.4
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 6.9e-106 388.3 381 55.9
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 1.2e-105 387.5 396 54.5
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 1.5e-105 387.1 393 53.9
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 1.5e-105 387.1 377 58.6
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 2.2e-104 383.3 380 54.7
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 4.9e-104 382.1 385 54.8
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 6.4e-104 381.7 381 54.1
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 1.9e-103 380.2 385 54.3
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 3.5e-102 375.9 385 53.8
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 6.0e-102 375.2 389 52.7
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 8.7e-101 371.3 384 53.6
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 1.9e-100 370.2 382 53.9
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 3.3e-100 369.4 377 52.5
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 1.8e-98 363.6 377 54.4
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 6.9e-98 361.7 405 50.9
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 2.5e-92 343.2 388 47.2
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 3.3e-92 342.8 387 47.5
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 2.1e-91 340.1 225 80.0
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 3.2e-87 326.2 381 50.1
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 4.1e-82 309.3 273 59.3
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 1.2e-81 307.8 284 58.5
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 2.6e-81 306.6 317 56.8
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.2e-78 297.7 261 58.6
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 9.1e-74 281.6 199 69.8
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 2.8e-67 260.0 170 78.8
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 4.8e-67 259.2 391 40.2
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 2.5e-63 246.9 391 39.4
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 5.7e-60 235.7 381 42.0
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 4.8e-59 232.6 178 66.3
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.6e-54 217.6 166 66.3
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.4e-50 204.5 378 39.4
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 3.8e-48 196.4 280 41.8
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 8.5e-48 195.3 166 62.0
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 2.3e-45 187.2 380 35.3
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 3.0e-45 186.8 169 61.5
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 4.4e-44 183.0 233 45.9
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.4e-42 177.9 161 61.5
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 5.7e-36 156.0 159 52.8
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 7.5e-36 155.6 189 49.2
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.9e-35 153.7 189 48.7
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 4.6e-33 146.4 169 53.8
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 5.9e-33 146.0 161 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 3.0e-24 117.1 142 50.7
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 1.1e-23 115.2 72 76.4
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.1e-21 107.1 92 59.8
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.1e-21 107.1 92 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 2.4e-18 97.4 165 33.9
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 5.6e-15 86.3 81 55.6
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.2e-13 79.7 68 57.4
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.2e-12 78.6 82 43.9
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 2.1e-06 57.8 197 28.9


User provided reference genes

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