Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 1.0e-185 653.3 336 100.0
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 3.2e-163 578.6 337 89.6
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 1.1e-160 570.1 329 89.7
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 6.2e-159 564.3 340 86.8
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 1.9e-152 542.7 335 82.7
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 1.5e-149 533.1 332 82.2
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 7.7e-149 530.8 336 81.2
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 3.8e-148 528.5 334 81.1
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 1.9e-147 526.2 334 81.7
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 1.2e-146 523.5 339 82.6
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 2.1e-146 522.7 332 81.3
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.1e-146 522.7 336 79.8
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 4.6e-146 521.5 332 81.6
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 6.1e-146 521.2 336 81.5
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 1.4e-145 520.0 323 82.7
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 1.4e-145 520.0 337 81.3
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 1.8e-145 519.6 336 79.8
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 5.7e-144 514.6 337 78.9
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 7.4e-144 514.2 310 85.5
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 3.7e-143 511.9 340 79.4
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 3.7e-143 511.9 339 76.4
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 3.7e-143 511.9 334 79.6
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 4.8e-143 511.5 317 84.2
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 1.4e-142 510.0 339 76.1
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 1.8e-142 509.6 348 77.0
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 1.8e-142 509.6 336 77.4
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 2.4e-142 509.2 336 78.6
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.1e-142 508.8 343 78.7
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 5.3e-142 508.1 336 79.5
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 5.3e-142 508.1 296 85.1
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 9.1e-142 507.3 344 78.8
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.2e-141 506.9 340 79.4
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.5e-141 506.5 339 79.1
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 1.5e-141 506.5 339 77.9
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.4e-141 505.4 344 78.8
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.7e-140 503.1 322 80.4
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 2.2e-140 502.7 342 77.2
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.2e-140 502.7 338 78.7
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 8.5e-140 500.7 335 78.2
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 1.1e-139 500.4 337 77.7
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 1.1e-139 500.4 334 78.1
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.4e-139 500.0 339 75.5
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 1.9e-139 499.6 333 77.5
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.9e-139 499.6 344 78.2
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 1.9e-139 499.6 296 83.4
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 1.9e-139 499.6 296 83.4
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 2.5e-139 499.2 289 88.2
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 2.5e-139 499.2 337 76.3
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 3.2e-139 498.8 335 77.3
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 7.2e-139 497.7 338 78.4
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.2e-138 496.9 338 77.8
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 1.6e-138 496.5 336 77.1
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 3.6e-138 495.4 345 75.1
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 3.6e-138 495.4 355 73.0
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 6.1e-138 494.6 337 76.9
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 2.3e-137 492.7 327 78.3
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 3.9e-137 491.9 339 74.6
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 3.9e-137 491.9 326 79.1
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 6.7e-137 491.1 308 79.5
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 1.1e-136 490.3 335 75.8
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 2.0e-136 489.6 344 73.0
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 5.7e-136 488.0 339 73.7
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 5.7e-136 488.0 339 73.7
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 5.7e-136 488.0 322 79.8
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 7.4e-136 487.6 322 76.4
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 7.4e-136 487.6 339 73.7
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 7.4e-136 487.6 339 73.7
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 1.7e-135 486.5 339 73.5
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 2.2e-135 486.1 304 81.6
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 2.8e-135 485.7 345 73.6
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 8.2e-135 484.2 337 74.8
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 1.8e-134 483.0 341 73.0
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.8e-134 483.0 337 74.5
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 2.4e-134 482.6 291 81.8
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 4.1e-134 481.9 301 78.7
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 4.1e-134 481.9 340 73.2
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 5.3e-134 481.5 339 73.2
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 9.1e-134 480.7 344 72.7
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 9.1e-134 480.7 325 76.6
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 4.5e-133 478.4 338 74.3
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 2.2e-132 476.1 331 74.6
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 7.2e-131 471.1 303 79.5
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 4.4e-128 461.8 327 75.5
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 1.4e-126 456.8 280 78.9
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 1.4e-126 456.8 326 74.5
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.0e-125 453.0 262 88.2
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 2.6e-125 452.6 276 79.7
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 5.9e-125 451.4 293 76.8
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.0e-124 450.7 330 71.5
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.1e-123 447.2 329 71.4
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 1.9e-123 446.4 344 72.1
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 4.0e-121 438.7 283 76.0
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 4.8e-119 431.8 393 61.1
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.6e-117 426.8 336 69.3
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.3e-113 412.9 273 80.6
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.1e-107 394.0 211 93.4
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.4e-105 387.1 250 76.4
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 5.2e-105 385.2 246 80.1
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 5.7e-104 381.7 237 81.4
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.8e-102 376.7 244 82.0
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 9.2e-102 374.4 235 80.4
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.2e-101 374.0 248 78.2
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.6e-101 373.6 235 78.3
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.3e-99 365.5 256 75.4
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.0e-97 360.9 250 74.0
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 5.2e-97 358.6 275 64.0
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 1.4e-94 350.5 258 64.7
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 5.0e-92 342.0 202 80.7
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 9.5e-91 337.8 312 61.9
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 3.4e-88 329.3 250 68.8
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 3.4e-80 302.8 263 55.5
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 5.4e-78 295.4 213 70.4
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 3.9e-76 289.3 159 88.1
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 9.3e-62 241.5 211 60.2
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 2.4e-57 226.9 159 76.1
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 3.9e-52 209.5 324 43.5
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 6.7e-52 208.8 336 43.2
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 9.6e-51 204.9 118 87.3
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 8.1e-50 201.8 120 79.2
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 2.4e-49 200.3 167 61.1
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 6.5e-47 192.2 116 80.2
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.2e-45 188.0 128 72.7
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.6e-45 187.6 223 49.8
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 2.5e-38 163.7 336 38.4
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 8.7e-36 155.2 234 42.3
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.3e-33 146.0 79 88.6
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.5e-27 127.9 63 93.7
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 3.3e-27 126.7 126 57.9
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 7.4e-27 125.6 279 31.5
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 9.7e-27 125.2 76 81.6
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 1.4e-25 121.3 77 74.0
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 7.2e-22 109.0 292 29.1
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 3.3e-19 100.1 102 52.0
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 1.4e-17 94.7 81 64.2
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 7.7e-16 89.0 168 39.9
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 1.0e-15 88.6 77 62.3
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 4.4e-11 73.2 45 77.8
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 1.6e-08 64.7 59 61.0
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 7.7e-08 62.4 103 41.7
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 1.0e-07 62.0 53 64.2
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 4.2e-06 56.6 74 45.9


User provided reference genes

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