Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G045500 Carya illinoinensis HOM05D004929 ORTHO05D006492 2.9e-210 734.9 363 100.0
Cfa007339 Carpinus fangiana HOM05D004929 ORTHO05D006492 8.2e-189 663.7 364 89.6
Haze_14758 Corylus avellana HOM05D004929 ORTHO05D006492 3.1e-188 661.8 364 89.6
CiPaw.04G029600 Carya illinoinensis HOM05D004929 ORTHO05D006492 3.4e-187 658.3 361 89.5
QL02p074005 Quercus lobata HOM05D004929 ORTHO05D006492 3.6e-176 621.7 347 86.2
GSVIVG01032385001 Vitis vinifera HOM05D004929 ORTHO05D006492 4.8e-173 611.3 356 82.9
Nn8g40033 Nelumbo nucifera HOM05D004929 ORTHO05D006492 7.7e-171 604.0 346 83.8
TAR633G2310 Trochodendron aralioides HOM05D004929 ORTHO05D006492 1.3e-170 603.2 348 83.6
MD09G1023000 Malus domestica HOM05D004929 ORTHO05D006492 3.8e-170 601.7 359 81.3
Dinv25726 Davidia involucrata HOM05D004929 ORTHO05D006492 1.9e-169 599.4 356 81.5
ClCG09G019380 Citrullus lanatus HOM05D004929 ORTHO05D006492 3.2e-169 598.6 360 79.2
Actinidia05982 Actinidia chinensis HOM05D004929 ORTHO05D006492 4.2e-169 598.2 353 81.0
MELO3C021592.2 Cucumis melo HOM05D004929 ORTHO05D006492 1.6e-168 596.3 360 79.4
Duzib147G0164 Durio zibethinus HOM05D004929 ORTHO05D006492 1.4e-167 593.2 360 79.4
Thecc.04G019500 Theobroma cacao HOM05D004929 ORTHO05D006492 3.9e-167 591.7 346 82.1
CsaV3_5G027030 Cucumis sativus L. HOM05D004929 ORTHO05D006492 5.2e-167 591.3 360 78.6
FvH4_6g51800 Fragaria vesca HOM05D004929 ORTHO05D006492 5.2e-167 591.3 351 82.1
vmacro05876 Vaccinium macrocarpon HOM05D004929 ORTHO05D006492 8.8e-167 590.5 362 78.7
Lju41A43T26 Lonicera japonica HOM05D004929 ORTHO05D006492 1.1e-166 590.1 346 81.2
Manes.15G151900 Manihot esculenta HOM05D004929 ORTHO05D006492 1.1e-166 590.1 349 81.9
FAN09G2944 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.0e-166 589.3 351 81.8
FAN14G2766 Fragaria x ananassa HOM05D004929 ORTHO05D006492 2.0e-166 589.3 351 82.1
MD17G1022300 Malus domestica HOM05D004929 ORTHO05D006492 2.0e-166 589.3 361 80.1
RcHm_v2.0_Chr2g0173281 Rosa chinensis HOM05D004929 ORTHO05D006492 3.3e-166 588.6 359 79.9
Prupe.3G293800 Prunus persica HOM05D004929 ORTHO05D006492 9.7e-166 587.0 346 82.1
Potri.001G343400 Populus trichocarpa HOM05D004929 ORTHO05D006492 2.2e-165 585.9 360 76.9
Sed0020215 Sechium edule HOM05D004929 ORTHO05D006492 2.2e-165 585.9 360 78.6
Cc09_g04510 Coffea canephora HOM05D004929 ORTHO05D006492 3.7e-165 585.1 346 81.5
PGR142G3088 Punica granatum HOM05D004929 ORTHO05D006492 3.7e-165 585.1 355 78.3
CANSAT64G1903 Cannabis sativa HOM05D004929 ORTHO05D006492 4.8e-165 584.7 346 81.2
Sed0027438 Sechium edule HOM05D004929 ORTHO05D006492 4.8e-165 584.7 351 79.2
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 1.1e-164 583.6 348 78.7
AL3G10510 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 3.1e-164 582.0 350 78.9
AT3G01640 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 4.1e-164 581.6 350 78.9
FAN05G4087 Fragaria x ananassa HOM05D004929 ORTHO05D006492 5.3e-164 581.3 359 79.9
CARHR075280 Cardamine hirsuta HOM05D004929 ORTHO05D006492 7.0e-164 580.9 360 76.7
Ciclev10015593m.g Citrus clementina HOM05D004929 ORTHO05D006492 7.0e-164 580.9 346 79.8
Nitab4.5_0001860g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 7.0e-164 580.9 351 79.2
Rhsim10G0014700 Rhododendron simsii HOM05D004929 ORTHO05D006492 1.2e-163 580.1 353 79.0
CAN.G473.20 Capsicum annuum HOM05D004929 ORTHO05D006492 1.6e-163 579.7 353 79.3
Sabra16G0222700 Salix brachista HOM05D004929 ORTHO05D006492 1.6e-163 579.7 346 77.7
Gorai.006G034800 Gossypium raimondii HOM05D004929 ORTHO05D006492 2.0e-163 579.3 360 77.5
Solyc02g093440.4 Solanum lycopersicum HOM05D004929 ORTHO05D006492 2.6e-163 578.9 350 79.4
BcaC01g04530 Brassica carinata HOM05D004929 ORTHO05D006492 4.5e-163 578.2 351 77.8
Gohir.D09G029800 Gossypium hirsutum HOM05D004929 ORTHO05D006492 4.5e-163 578.2 360 76.9
Thhalv10020980m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 5.9e-163 577.8 359 76.9
Gohir.A09G030100 Gossypium hirsutum HOM05D004929 ORTHO05D006492 5.9e-163 577.8 360 76.9
BraA03t12414Z Brassica rapa HOM05D004929 ORTHO05D006492 1.0e-162 577.0 351 77.5
Sopen02g038230 Solanum pennellii HOM05D004929 ORTHO05D006492 1.0e-162 577.0 350 79.4
C03p39500 Brassica napus HOM05D004929 ORTHO05D006492 2.2e-162 575.9 351 77.5
PSO384G0906 Papaver somniferum HOM05D004929 ORTHO05D006492 2.9e-162 575.5 349 78.5
Peaxi162Scf03028g00012 Petunia axillaris HOM05D004929 ORTHO05D006492 3.8e-162 575.1 346 80.1
FAN02G0047 Fragaria x ananassa HOM05D004929 ORTHO05D006492 8.5e-162 573.9 363 78.2
Sp3g00410 Schrenkiella parvula HOM05D004929 ORTHO05D006492 8.5e-162 573.9 359 76.6
A03p32440 Brassica napus HOM05D004929 ORTHO05D006492 1.1e-161 573.5 351 77.2
BolC3t16218H Brassica oleracea HOM05D004929 ORTHO05D006492 1.1e-161 573.5 351 76.9
THA.LOC104821096 Tarenaya hassleriana HOM05D004929 ORTHO05D006492 1.1e-161 573.5 359 76.6
PSO699G0033 Papaver somniferum HOM05D004929 ORTHO05D006492 1.5e-161 573.2 348 78.4
Peaxi162Scf00129g01650 Petunia axillaris HOM05D004929 ORTHO05D006492 1.5e-161 573.2 346 79.8
PGSC0003DMG400012608 Solanum tuberosum HOM05D004929 ORTHO05D006492 3.2e-161 572.0 349 79.1
SalBow7G3047 Salvia bowleyana HOM05D004929 ORTHO05D006492 5.5e-161 571.2 349 77.7
Peaxi162Scf00080g01316 Petunia axillaris HOM05D004929 ORTHO05D005557 2.1e-160 569.3 346 79.2
EL10Ac6g14097 Beta vulgaris HOM05D004929 ORTHO05D006492 4.7e-160 568.2 338 79.6
Aa31LG5G10780 Aethionema arabicum HOM05D004929 ORTHO05D006492 6.1e-160 567.8 349 78.8
Hund23289 Selenicereus undatus HOM05D004929 ORTHO05D006492 8.8e-159 563.9 345 78.3
MSTRG.3138 Avicennia marina HOM05D004929 ORTHO05D006492 1.5e-158 563.1 349 77.4
Carub.0003s0042 Capsella rubella HOM05D004929 ORTHO05D006492 1.5e-158 563.1 362 74.9
Thhalv10013912m.g Eutrema salsugineum HOM05D004929 ORTHO05D006492 3.3e-158 562.0 347 76.1
TWI12G0632 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 4.4e-158 561.6 348 76.7
TWI56G0780 Tripterygium wilfordii HOM05D004929 ORTHO05D006492 4.4e-158 561.6 346 77.2
Phvul.004G004700 Phaseolus vulgaris HOM05D004929 ORTHO05D006492 1.7e-157 559.7 349 78.2
MBI05_g22077_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 2.2e-157 559.3 347 78.7
DCAR_021732 Daucus carota HOM05D004929 ORTHO05D006492 2.8e-157 558.9 331 79.8
Migut.K01411 Erythranthe guttata HOM05D004929 ORTHO05D006492 2.8e-157 558.9 352 75.0
AL6G25200 Arabidopsis lyrata HOM05D004929 ORTHO05D006492 4.8e-157 558.1 346 77.5
Glyma.05G002500 Glycine max HOM05D004929 ORTHO05D006492 8.2e-157 557.4 348 75.6
Aqoxy5G00914 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.1e-156 557.0 346 77.5
arahy.Tifrunner.gnm1.ann1.FEY4ZS Arachis hypogaea HOM05D004929 ORTHO05D006492 1.1e-156 557.0 346 78.6
Medtr6g004430 Medicago truncatula HOM05D004929 ORTHO05D006492 1.1e-156 557.0 349 77.7
Aqoxy4G03095 Aquilegia oxysepala HOM05D004929 ORTHO05D006492 1.8e-156 556.2 342 77.2
arahy.Tifrunner.gnm1.ann1.NF5K9F Arachis hypogaea HOM05D004929 ORTHO05D006492 1.8e-156 556.2 346 78.6
VMungo0464G1388 Vigna mungo HOM05D004929 ORTHO05D006492 3.1e-156 555.4 347 77.8
CARHR198840 Cardamine hirsuta HOM05D004929 ORTHO05D006492 9.1e-156 553.9 347 76.1
AT5G14470 Arabidopsis thaliana HOM05D004929 ORTHO05D006492 1.2e-155 553.5 346 76.3
BraA10t44472Z Brassica rapa HOM05D004929 ORTHO05D006492 1.2e-155 553.5 351 74.9
Carub.0006s1265 Capsella rubella HOM05D004929 ORTHO05D006492 2.0e-155 552.7 347 76.1
Ca_04143_v3 Cicer arietinum L. HOM05D004929 ORTHO05D006492 2.0e-155 552.7 349 77.1
HPP92_015407 Vanilla planifolia HOM05D004929 ORTHO05D006492 2.7e-155 552.4 348 77.0
BcaB08g36997 Brassica carinata HOM05D004929 ORTHO05D006492 5.9e-155 551.2 354 74.9
Lsat_1_v5_gn_0_18301 Lactuca sativa HOM05D004929 ORTHO05D006492 1.1e-153 547.0 360 73.1
TPR.G31950 Trifolium pratense HOM05D004929 ORTHO05D006492 1.1e-153 547.0 356 74.4
Lalb_Chr06g0176621 Lupinus albus HOM05D004929 ORTHO05D006492 7.2e-153 544.3 347 74.4
Duzib264G0638 Durio zibethinus HOM05D004929 ORTHO05D006492 1.2e-152 543.5 394 69.8
Ah.03g137000 Amaranthus hybridus HOM05D004929 ORTHO05D006492 3.6e-152 542.0 339 75.2
HanXRQChr17g0548641 Helianthus annuus HOM05D004929 ORTHO05D006492 6.1e-152 541.2 351 75.2
HanXRQChr17g0548651 Helianthus annuus HOM05D004929 ORTHO05D006492 1.0e-151 540.4 341 76.2
ECA246G1179 Erigeron canadensis HOM05D004929 ORTHO05D006492 1.8e-151 539.7 361 74.2
Lj2g0024676 Lotus japonicus HOM05D004929 ORTHO05D006492 1.8e-151 539.7 353 74.2
AUR62008872 Chenopodium quinoa HOM05D004929 ORTHO05D006492 1.2e-150 537.0 344 75.3
AUR62031837 Chenopodium quinoa HOM05D004929 ORTHO05D006492 3.1e-148 528.9 384 68.0
Zm00001eb025800 Zea mays HOM05D004929 ORTHO05D006492 1.2e-147 526.9 355 72.4
ATR0827G043 Amborella trichopoda HOM05D004929 ORTHO05D006492 3.3e-145 518.8 369 69.6
Os11g0217300 Oryza sativa ssp. japonica HOM05D004929 ORTHO05D006492 3.3e-145 518.8 344 73.0
arahy.Tifrunner.gnm1.ann1.BJ3QP1 Arachis hypogaea HOM05D004929 ORTHO05D006492 1.2e-144 516.9 313 80.8
BcaC04g19032 Brassica carinata HOM05D004929 ORTHO05D006492 5.2e-143 511.5 353 71.7
BcaB08g36995 Brassica carinata HOM05D004929 ORTHO05D006492 2.4e-140 502.7 359 70.2
Oeu018151.1 Olea europaea HOM05D004929 ORTHO05D006492 2.4e-140 502.7 346 72.0
SHI00354 Sapria himalayana HOM05D004929 ORTHO05D006492 9.2e-140 500.7 339 70.2
Eucgr.I01731 Eucalyptus grandis HOM05D004929 ORTHO05D006492 2.3e-135 486.1 285 82.8
Dinv33427 Davidia involucrata HOM05D004929 ORTHO05D006492 1.1e-132 477.2 282 81.2
COL.COLO4_29172 Corchorus olitorius HOM05D004929 ORTHO05D006492 1.4e-132 476.9 350 68.9
A10p24090 Brassica napus HOM05D004929 ORTHO05D006492 2.5e-129 466.1 352 64.2
SMO145G0043 Selaginella moellendorffii HOM05D004929 ORTHO05D006492 1.3e-125 453.8 334 65.3
SGA_v2.0_scaffold30G12409 Striga asiatica HOM05D004929 ORTHO05D006492 4.1e-124 448.7 268 80.2
Sc03g0007290 Simmondsia chinensis HOM05D004929 ORTHO05D006492 5.4e-124 448.4 268 79.1
Nitab4.5_0006683g0060 Nicotiana tabacum HOM05D004929 ORTHO05D006492 6.0e-123 444.9 354 64.1
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 3.0e-122 442.6 268 78.4
Psat1g053480 Pisum sativum HOM05D004929 ORTHO05D006492 1.2e-118 430.6 271 77.1
HPP92_026990 Vanilla planifolia HOM05D004929 ORTHO05D006492 1.1e-116 424.1 265 77.7
AagrBONN_evm.TU.Sc2ySwM_228.449 Anthoceros agrestis HOM05D000718 ORTHO05D002712 1.2e-110 404.1 291 65.6
CBR_g3618 Chara braunii HOM05D004929 ORTHO05D006492 1.2e-110 404.1 342 59.6
Mapoly0023s0058 Marchantia polymorpha HOM05D004929 ORTHO05D006492 5.8e-110 401.7 341 60.4
Atru.chr6.2430 Acer truncatum HOM05D004929 ORTHO05D006492 1.6e-107 393.7 236 80.1
SGA_v2.0_scaffold47G17516 Striga asiatica HOM05D004929 ORTHO05D006492 3.3e-105 386.0 337 61.1
SHI25478 Sapria himalayana HOM05D004929 ORTHO05D006492 1.5e-102 377.1 283 65.4
ATR0681G379 Amborella trichopoda HOM05D004929 ORTHO05D006492 3.4e-102 375.9 249 74.3
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 7.6e-102 374.8 268 66.0
BolC9t59108H Brassica oleracea HOM05D004929 ORTHO05D006492 1.7e-98 363.6 361 54.0
C09p62710 Brassica napus HOM05D004929 ORTHO05D006492 1.1e-97 360.9 352 54.3
CDE07G0337 Ceratophyllum demersum HOM05D004929 ORTHO05D006492 4.6e-91 339.0 204 77.0
Nitab4.5_0000040g0670 Nicotiana tabacum HOM05D004929 ORTHO05D006492 4.6e-91 339.0 349 54.2
Cre02.g107600 Chlamydomonas reinhardtii HOM05D004929 ORTHO05D006492 1.0e-90 337.8 351 52.4
PRCOL_00005101 Prasinoderma coloniale HOM05D004929 ORTHO05D006492 9.3e-84 314.7 348 50.0
MCO09G795 Micromonas commoda HOM05D004929 ORTHO05D006492 6.0e-83 312.0 362 47.0
Nitab4.5_0001550g0030 Nicotiana tabacum HOM05D004929 ORTHO05D006492 6.0e-75 285.4 234 65.4
Oeu033729.3 Olea europaea HOM05D004929 ORTHO05D006492 1.0e-69 268.1 208 67.8
BcaB08g36982 Brassica carinata HOM05D004929 ORTHO05D006492 1.4e-68 264.2 166 75.9
MBI05_g01825_MAGBIO Magnolia biondii HOM05D004929 ORTHO05D006492 3.3e-65 253.1 216 60.6
BolC9t59344H Brassica oleracea HOM05D004929 ORTHO05D006492 7.0e-55 218.8 194 59.3
Atru.chr6.2429 Acer truncatum HOM05D004929 ORTHO05D006492 8.0e-51 205.3 112 82.1
MSTRG.3285 Avicennia marina HOM05D004929 ORTHO05D006492 2.6e-49 200.3 131 74.8
CDE07G1161 Ceratophyllum demersum HOM05D004929 ORTHO05D043891 2.2e-37 160.6 113 69.0
A10p26090 Brassica napus HOM05D004929 ORTHO05D006492 2.1e-27 127.5 187 42.2
MD17G1022500 Malus domestica HOM05D004929 ORTHO05D006492 2.3e-26 124.0 75 76.0
BcaNung06761 Brassica carinata HOM05D004929 ORTHO05D006492 1.1e-23 115.2 70 75.7
Sopen02g038030 Solanum pennellii HOM05D004929 ORTHO05D006492 1.5e-20 104.8 68 66.2
Sp6g29550 Schrenkiella parvula HOM05D004929 ORTHO05D043891 7.3e-20 102.4 64 75.0
arahy.Tifrunner.gnm1.ann1.6CI6DX Arachis hypogaea HOM05D004929 ORTHO05D031499 3.1e-10 70.5 44 70.5
Glyma.19G002700 Glycine max HOM05D004929 ORTHO05D215243 2.6e-09 67.4 83 47.0
arahy.Tifrunner.gnm1.ann1.XQCE19 Arachis hypogaea HOM05D004929 ORTHO05D031499 5.8e-09 66.2 43 65.1
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 1.2e-06 58.5 215 24.7
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 2.7e-06 57.4 269 25.7
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 7.8e-06 55.8 202 25.2


User provided reference genes

Program Settings