Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 5.1e-251 870.5 424 100.0
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 8.3e-225 783.5 422 89.1
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 8.6e-222 773.5 424 86.1
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 8.6e-222 773.5 424 86.3
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.2e-221 771.5 424 84.7
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 6.8e-219 763.8 424 85.6
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.2e-218 763.1 424 84.4
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 4.4e-218 761.1 426 85.2
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 4.9e-217 757.7 433 82.7
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 7.0e-216 753.8 426 83.3
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.7e-215 751.9 426 84.3
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 3.5e-215 751.5 424 83.0
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.0e-214 750.0 426 83.1
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 1.3e-214 749.6 424 84.4
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 8.6e-214 746.9 430 83.5
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 7.3e-213 743.8 424 82.5
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 2.1e-212 742.3 445 78.7
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.5e-210 736.1 426 82.6
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 5.7e-210 734.2 426 82.2
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.2e-209 732.3 424 83.0
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 2.2e-209 732.3 423 80.9
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 3.7e-209 731.5 426 82.4
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.4e-208 729.6 425 81.9
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 5.4e-208 727.6 424 80.9
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 9.2e-208 726.9 426 81.7
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 4.6e-207 724.5 426 81.2
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 1.7e-206 722.6 427 80.1
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 3.9e-206 721.5 424 82.3
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.5e-205 719.5 418 82.1
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.5e-205 718.8 426 81.2
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 4.3e-205 718.0 388 89.2
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 5.6e-205 717.6 426 79.6
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.6e-204 716.1 418 82.1
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 2.8e-204 715.3 418 81.6
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 4.0e-203 711.4 424 78.1
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 5.2e-203 711.1 448 77.2
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 8.9e-203 710.3 424 78.8
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.4e-202 708.4 427 79.6
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 3.4e-202 708.4 439 77.0
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 9.8e-202 706.8 425 77.2
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.1e-200 703.4 424 77.4
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 3.5e-199 698.4 476 71.6
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 1.0e-198 696.8 446 75.6
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 2.3e-198 695.7 424 78.1
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 8.6e-198 693.7 440 75.2
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.3e-197 691.4 440 75.2
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.3e-197 691.4 440 75.0
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 3.6e-196 688.3 434 77.4
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.7e-193 679.5 426 77.5
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.9e-193 678.7 426 74.6
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.6e-191 672.9 426 74.9
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 2.1e-191 672.5 428 74.8
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 2.7e-191 672.2 417 75.8
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 6.0e-191 671.0 416 75.5
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 7.8e-191 670.6 392 80.9
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 7.8e-191 670.6 427 74.5
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 2.3e-190 669.1 421 75.8
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.1e-189 666.8 422 74.4
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 3.3e-189 665.2 417 76.0
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 4.3e-189 664.8 426 74.9
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 5.6e-189 664.5 428 74.1
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 7.3e-189 664.1 427 75.2
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 1.2e-188 663.3 423 75.4
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 4.7e-188 661.4 426 74.9
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 4.7e-188 661.4 426 74.9
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 6.2e-188 661.0 427 72.8
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.1e-187 660.2 394 79.4
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.4e-187 659.8 446 70.6
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.2e-186 656.8 412 75.5
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 4.9e-185 651.4 394 77.2
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 8.4e-185 650.6 423 74.0
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 8.4e-185 650.6 425 74.4
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 4.1e-184 648.3 425 72.9
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.8e-179 632.9 428 71.0
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 2.4e-179 632.5 395 75.2
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 4.0e-179 631.7 430 70.9
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 5.2e-179 631.3 426 71.8
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 3.4e-178 628.6 413 71.2
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 7.6e-178 627.5 425 71.3
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 6.4e-177 624.4 426 71.6
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 3.5e-175 618.6 394 73.9
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 3.5e-175 618.6 423 70.9
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.6e-175 618.2 495 63.2
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 3.3e-173 612.1 422 69.2
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 4.3e-173 611.7 418 71.1
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 2.4e-171 605.9 473 63.6
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 9.9e-170 600.5 370 78.4
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 2.4e-168 595.9 424 70.0
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 7.9e-167 590.9 424 67.0
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.9e-166 588.6 456 67.5
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 8.7e-166 587.4 381 74.5
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.2e-162 577.0 343 79.9
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 3.5e-159 565.5 421 63.2
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 4.9e-153 545.0 424 62.5
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.1e-151 539.7 431 65.2
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 5.1e-150 535.0 385 69.1
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 7.4e-149 531.2 425 64.2
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.0e-146 523.1 435 63.9
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 3.8e-145 518.8 356 68.8
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 6.5e-145 518.1 406 64.5
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 2.2e-137 493.0 302 76.2
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 2.0e-130 469.9 402 59.0
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 6.3e-124 448.4 426 54.0
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 8.2e-124 448.0 289 75.1
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-123 447.2 433 55.7
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 5.3e-123 445.3 288 74.7
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 7.0e-123 444.9 288 75.0
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 3.5e-122 442.6 422 51.7
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.2e-119 434.1 423 55.8
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 2.3e-118 429.9 455 52.3
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 4.1e-115 419.1 424 52.8
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.2e-114 417.5 434 49.8
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.5e-104 384.0 633 39.5
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 2.2e-100 370.2 431 46.2
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 2.1e-95 353.6 269 61.3
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 1.3e-89 334.3 689 34.3
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 1.3e-89 334.3 287 59.6
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 6.2e-87 325.5 198 75.3
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.5e-85 320.9 265 60.0
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 3.0e-65 253.4 541 34.0
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 4.7e-63 246.1 326 46.0
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.4e-59 232.6 161 73.3
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 6.0e-58 229.2 145 74.5
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 6.7e-49 199.1 122 76.2
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 1.1e-43 181.8 107 77.6
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.8e-38 164.5 147 53.7
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 6.9e-38 162.5 288 36.8
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 2.0e-37 161.0 288 36.8
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 1.3e-33 148.3 88 79.5
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 2.5e-32 144.1 90 73.3
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 1.8e-25 121.3 85 68.2
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.9e-25 120.2 69 82.6
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.7e-23 114.8 58 91.4
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-19 101.3 67 76.1
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 7.0e-14 82.8 91 41.8
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 3.5e-13 80.5 499 22.2
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 7.7e-13 79.3 66 59.1
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 4.7e-10 70.1 44 75.0
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.2e-07 61.2 54 53.7
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 2.2e-07 61.2 43 62.8


User provided reference genes

Program Settings