Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 4.1e-142 508.1 257 100.0
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 6.3e-119 431.0 257 82.9
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 1.1e-118 430.3 257 82.9
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 7.0e-110 401.0 257 77.8
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 7.2e-107 391.0 260 77.7
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 3.3e-91 339.0 262 63.7
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 9.5e-91 337.4 262 66.0
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 1.2e-90 337.0 262 66.4
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 1.2e-90 337.0 262 64.9
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 8.0e-90 334.3 262 64.5
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 5.2e-89 331.6 262 63.4
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 1.2e-88 330.5 258 66.7
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.2e-88 330.5 258 66.7
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.5e-88 330.1 260 65.0
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.5e-88 330.1 258 66.3
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 2.0e-88 329.7 258 64.7
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.6e-88 329.3 258 66.3
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.4e-88 328.9 258 66.7
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 3.4e-88 328.9 258 66.7
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 5.8e-88 328.2 258 64.3
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 1.3e-87 327.0 258 65.5
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.7e-87 326.6 258 65.5
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 6.4e-87 324.7 257 62.3
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 8.3e-87 324.3 263 61.6
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 5.4e-86 321.6 256 64.1
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 5.4e-86 321.6 258 63.6
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 7.0e-86 321.2 263 61.6
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 2.7e-85 319.3 263 63.1
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 4.6e-85 318.5 256 63.3
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 1.7e-84 316.6 253 64.8
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 2.3e-84 316.2 263 63.9
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 5.0e-84 315.1 261 60.5
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 8.6e-84 314.3 260 62.3
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 1.1e-83 313.9 257 62.3
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 1.9e-83 313.2 248 62.9
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 2.5e-83 312.8 263 63.1
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 4.3e-83 312.0 261 61.3
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 5.6e-83 311.6 261 62.5
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 5.6e-83 311.6 256 60.5
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 9.5e-83 310.8 255 62.0
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 4.7e-82 308.5 264 60.2
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 6.2e-82 308.1 261 58.6
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 8.1e-82 307.8 263 60.8
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 1.4e-81 307.0 264 59.8
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 1.8e-81 306.6 261 59.0
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 4.0e-81 305.4 263 60.8
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 5.2e-81 305.1 265 59.6
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 6.8e-81 304.7 260 59.2
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 6.8e-81 304.7 260 60.0
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 8.9e-81 304.3 265 60.0
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 8.9e-81 304.3 263 60.1
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 1.2e-80 303.9 258 60.9
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 2.6e-80 302.8 265 59.6
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 2.2e-79 299.7 259 59.8
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 1.4e-78 297.0 264 57.2
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 5.4e-78 295.0 263 57.0
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 9.2e-78 294.3 253 59.3
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 1.2e-77 293.9 220 69.5
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 1.6e-77 293.5 258 58.1
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 2.1e-77 293.1 250 61.6
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 2.7e-77 292.7 261 57.5
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 3.5e-77 292.4 265 57.4
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 3.5e-77 292.4 264 57.6
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 4.6e-77 292.0 262 58.4
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 6.0e-77 291.6 263 56.7
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 6.0e-77 291.6 263 56.3
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 7.8e-77 291.2 258 57.0
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 7.8e-77 291.2 262 57.3
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 1.0e-76 290.8 261 56.7
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 1.3e-76 290.4 254 60.2
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 1.7e-76 290.0 261 56.3
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 5.1e-76 288.5 261 55.9
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 6.6e-76 288.1 256 59.0
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 6.6e-76 288.1 256 59.0
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 6.6e-76 288.1 256 59.0
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 1.1e-75 287.3 260 57.7
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 1.5e-75 287.0 260 57.3
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 2.8e-74 282.7 263 57.8
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 2.8e-74 282.7 256 55.5
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 3.6e-74 282.3 262 55.7
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 1.8e-73 280.0 272 55.1
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 2.3e-73 279.6 224 62.1
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 3.1e-73 279.3 259 56.4
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 1.2e-72 277.3 263 56.3
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 5.8e-72 275.0 317 47.6
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 5.4e-70 268.5 215 65.1
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 4.6e-69 265.4 230 59.1
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 8.6e-68 261.2 269 54.6
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 1.6e-66 256.9 267 52.8
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 4.7e-66 255.4 224 61.2
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 4.0e-65 252.3 254 51.6
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 7.6e-64 248.1 225 57.8
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 2.9e-63 246.1 226 57.1
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 2.9e-63 246.1 257 51.4
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 1.0e-60 237.7 255 51.0
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 1.4e-57 227.3 264 48.5
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 1.2e-56 224.2 257 49.0
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 2.6e-56 223.0 164 67.7
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 2.2e-55 219.9 210 56.2
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 4.2e-54 215.7 163 65.6
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.4e-49 200.7 151 64.9
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 3.2e-46 189.5 181 54.1
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 1.3e-44 184.1 157 58.0
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 1.3e-44 184.1 157 58.0
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 1.3e-44 184.1 157 58.0
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 2.3e-44 183.3 147 59.9
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 2.5e-43 179.9 150 56.0
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 1.4e-41 174.1 252 42.1
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 5.1e-36 155.6 153 52.9
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 4.3e-35 152.5 262 35.1
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 1.3e-34 151.0 110 65.5
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 3.7e-34 149.4 124 57.3
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 8.2e-34 148.3 280 34.6
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 2.4e-33 146.7 112 66.1
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 2.0e-32 143.7 201 41.8
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.1e-30 137.9 163 47.9
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 3.3e-27 126.3 156 52.6
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 3.1e-25 119.8 103 57.3
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 1.9e-22 110.5 103 53.4
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 7.9e-21 105.1 81 58.0
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 1.8e-20 104.0 80 62.5
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 2.3e-20 103.6 76 64.5
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 3.0e-20 103.2 95 53.7
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 3.7e-18 96.3 79 63.3
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 1.3e-15 87.8 84 53.6
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 4.2e-14 82.8 185 36.8
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 1.8e-12 77.4 48 72.9
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 1.8e-12 77.4 65 56.9
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 1.3e-10 71.2 88 45.5
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 2.9e-07 60.1 67 52.2


User provided reference genes

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