Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 5.2e-218 760.8 384 100.0
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 3.0e-165 585.5 328 88.1
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 2.5e-164 582.4 328 86.3
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 2.8e-163 578.9 328 87.5
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 6.2e-163 577.8 328 87.2
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 6.2e-163 577.8 328 87.5
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 8.1e-163 577.4 328 85.7
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.1e-162 577.0 328 85.7
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.4e-162 575.9 328 86.0
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 4.0e-162 575.1 329 86.3
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 6.9e-162 574.3 328 85.7
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 9.0e-162 573.9 328 86.9
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 9.0e-162 573.9 328 86.9
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 3.4e-161 572.0 328 85.4
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 4.5e-161 571.6 328 85.7
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 4.5e-161 571.6 328 85.1
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 5.8e-161 571.2 328 85.7
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 7.6e-161 570.9 328 85.4
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.2e-160 569.3 328 86.0
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.2e-160 569.3 328 86.0
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 2.2e-160 569.3 328 86.0
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 2.2e-160 569.3 328 86.0
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 2.9e-160 568.9 328 84.8
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 3.8e-160 568.5 325 85.2
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 3.8e-160 568.5 327 85.6
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 4.9e-160 568.2 328 85.4
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 4.9e-160 568.2 325 85.5
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 6.5e-160 567.8 327 84.7
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 8.4e-160 567.4 327 85.3
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 8.4e-160 567.4 328 86.0
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.1e-159 567.0 328 85.7
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 1.1e-159 567.0 330 83.3
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 1.9e-159 566.2 328 83.8
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 1.9e-159 566.2 329 83.6
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 2.5e-159 565.8 328 84.1
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 2.5e-159 565.8 328 83.8
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 3.2e-159 565.5 328 84.1
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.2e-159 565.1 328 84.5
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 5.5e-159 564.7 328 83.8
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 9.3e-159 563.9 330 84.5
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 9.3e-159 563.9 328 85.4
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 1.6e-158 563.1 325 84.9
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 2.1e-158 562.8 332 82.8
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 2.7e-158 562.4 328 83.5
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 4.6e-158 561.6 328 83.8
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 6.0e-158 561.2 327 84.7
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 6.0e-158 561.2 317 85.5
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 6.0e-158 561.2 328 85.1
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 6.0e-158 561.2 351 79.8
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 7.9e-158 560.8 328 85.1
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.0e-157 560.5 328 83.5
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 1.3e-157 560.1 322 86.0
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 5.1e-157 558.1 328 83.2
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 6.7e-157 557.8 328 82.9
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 8.7e-157 557.4 327 83.8
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 8.7e-157 557.4 328 83.8
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 8.7e-157 557.4 328 84.1
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 1.5e-156 556.6 328 82.9
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 1.9e-156 556.2 328 83.5
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 1.9e-156 556.2 324 84.9
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 1.9e-156 556.2 328 83.2
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.9e-156 556.2 328 82.9
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 4.3e-156 555.1 328 83.5
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 5.7e-156 554.7 328 83.8
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 9.6e-156 553.9 328 80.2
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 1.3e-155 553.5 328 80.2
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 1.6e-155 553.1 328 82.6
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 8.2e-155 550.8 365 76.4
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 1.1e-154 550.4 328 82.3
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 1.1e-154 550.4 328 84.1
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 1.1e-154 550.4 337 81.0
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.4e-154 550.1 328 83.8
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 1.8e-154 549.7 331 82.5
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 2.4e-154 549.3 328 83.2
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 2.4e-154 549.3 328 82.0
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 4.1e-154 548.5 331 82.2
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 4.1e-154 548.5 328 82.9
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 4.1e-154 548.5 324 82.4
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 5.3e-154 548.1 328 82.9
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 6.9e-154 547.7 331 82.8
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 9.0e-154 547.4 328 83.2
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 9.0e-154 547.4 328 81.7
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 9.0e-154 547.4 328 81.7
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 1.2e-153 547.0 328 83.8
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 1.5e-153 546.6 328 83.2
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 2.6e-153 545.8 328 82.9
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 5.9e-153 544.7 328 82.0
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 5.9e-153 544.7 331 81.9
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 5.9e-153 544.7 328 83.5
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 7.6e-153 544.3 328 82.0
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 2.9e-152 542.3 328 81.7
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 1.1e-151 540.4 328 80.8
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 1.4e-151 540.0 328 82.6
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.4e-151 540.0 324 82.7
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 2.5e-151 539.3 328 82.9
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 2.1e-150 536.2 304 86.5
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 1.0e-149 533.9 328 79.3
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 2.3e-149 532.7 328 79.0
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 2.2e-147 526.2 327 77.4
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 3.7e-147 525.4 357 75.4
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 1.2e-145 520.4 327 77.1
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.5e-145 520.0 328 76.8
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 7.7e-145 517.7 333 76.6
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 5.0e-144 515.0 384 70.6
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 6.5e-144 514.6 338 77.5
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 5.5e-143 511.5 333 75.7
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 1.2e-142 510.4 328 75.9
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 6.7e-141 504.6 327 74.6
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 2.8e-139 499.2 332 74.4
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 4.8e-139 498.4 311 77.2
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 1.8e-138 496.5 317 77.3
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 2.6e-137 492.7 327 73.1
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 3.8e-136 488.8 327 71.9
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 6.5e-136 488.0 328 76.2
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 1.5e-132 476.9 303 76.2
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 2.5e-127 459.5 324 70.4
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 6.3e-123 444.9 303 72.9
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 1.5e-116 423.7 308 66.6
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 2.8e-115 419.5 328 68.6
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 5.9e-113 411.8 252 79.4
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 5.5e-111 405.2 321 64.8
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.2e-110 404.1 251 79.3
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 2.7e-105 386.3 231 82.7
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 4.5e-105 385.6 228 81.6
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 8.6e-104 381.3 340 60.6
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 2.5e-103 379.8 220 84.1
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 7.3e-103 378.3 236 79.7
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 7.3e-103 378.3 239 77.0
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 4.7e-102 375.6 219 84.5
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 1.5e-92 344.0 197 85.3
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 3.9e-88 329.3 207 77.8
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 2.1e-86 323.6 192 82.3
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 3.4e-84 316.2 315 53.3
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 9.2e-82 308.1 310 53.9
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.1e-81 307.0 182 81.3
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.5e-73 279.6 171 80.1
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 1.5e-71 274.2 231 60.6
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 5.1e-64 249.2 184 63.6
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 8.7e-64 248.4 145 84.8
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 9.3e-58 228.4 124 89.5
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.4e-53 213.8 151 69.5
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 4.9e-43 179.5 144 60.4
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 2.5e-39 167.2 137 65.0
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.3e-38 164.9 102 79.4
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 4.6e-33 146.4 87 82.8
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 8.7e-32 142.1 104 67.3
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 1.5e-31 141.4 74 89.2
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 2.5e-31 140.6 96 71.9
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 2.9e-27 127.1 90 73.3
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 5.0e-27 126.3 77 77.9
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 3.9e-24 116.7 127 50.4
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 5.1e-24 116.3 76 73.7
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.3e-22 111.7 108 57.4
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.0e-19 102.1 77 67.5
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 9.4e-18 95.5 74 64.9
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 1.6e-17 94.7 116 51.7
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 3.6e-17 93.6 308 27.3
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 3.0e-16 90.5 202 31.2
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 5.2e-16 89.7 308 28.6
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 2.8e-14 84.0 281 28.8
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 3.7e-14 83.6 113 49.6
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 7.0e-13 79.3 271 29.9
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 8.5e-11 72.4 103 45.6
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 3.2e-10 70.5 193 28.5
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 2.7e-09 67.4 53 67.9
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 4.0e-08 63.5 42 69.0
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 3.3e-07 60.5 45 64.4


User provided reference genes

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