Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 2.6e-169 599.7 437 100.0
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 8.8e-133 478.4 441 85.7
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 9.2e-122 441.8 420 85.2
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 1.2e-121 441.4 443 82.8
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 7.1e-106 389.0 424 78.8
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 7.8e-105 385.6 445 73.9
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 1.0e-104 385.2 425 77.9
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 1.7e-104 384.4 445 74.6
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 2.3e-104 384.0 414 80.0
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 1.1e-103 381.7 440 75.5
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 2.8e-102 377.1 425 76.9
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 4.7e-102 376.3 422 76.8
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 8.9e-101 372.1 411 68.4
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 3.4e-100 370.2 428 76.4
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 1.3e-99 368.2 432 75.5
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 2.2e-99 367.5 424 75.7
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 4.9e-99 366.3 422 77.3
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 8.3e-99 365.5 422 75.4
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 1.1e-98 365.2 422 75.4
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 2.4e-98 364.0 434 74.9
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 2.4e-98 364.0 427 74.7
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 7.1e-98 362.5 424 75.2
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 9.2e-98 362.1 442 72.2
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 1.3e-96 358.2 423 74.7
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 1.7e-96 357.8 421 74.6
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 3.0e-96 357.1 427 53.9
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 6.6e-96 355.9 438 72.4
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.9e-95 354.4 409 76.0
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 1.2e-94 351.7 427 73.8
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 4.7e-94 349.7 434 71.9
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 4.7e-94 349.7 408 75.7
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 1.4e-93 348.2 421 73.9
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 2.0e-92 344.4 422 72.3
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 1.3e-91 341.7 434 71.7
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 3.8e-91 340.1 426 71.4
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 4.9e-91 339.7 422 72.5
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 4.9e-91 339.7 422 72.0
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 8.4e-91 339.0 416 75.7
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 1.9e-90 337.8 423 72.1
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 2.4e-90 337.4 407 75.2
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 3.2e-90 337.0 426 71.1
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 3.2e-90 337.0 426 71.1
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 5.4e-90 336.3 437 71.9
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 7.1e-90 335.9 423 73.5
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 1.2e-89 335.1 429 72.7
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 7.8e-89 332.4 423 72.8
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 1.3e-88 331.6 401 74.8
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 1.3e-88 331.6 422 72.5
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 1.3e-88 331.6 437 71.6
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 2.3e-88 330.9 443 69.3
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 3.0e-88 330.5 409 74.1
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 5.6e-87 326.2 414 73.9
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.6e-86 324.7 411 73.7
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.6e-86 324.7 411 74.0
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 1.6e-86 324.7 437 70.0
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 3.6e-86 323.6 422 71.1
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 4.8e-86 323.2 437 70.0
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 1.1e-85 322.0 422 70.6
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 1.2e-84 318.5 426 71.1
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 3.4e-84 317.0 422 70.6
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 2.9e-83 313.9 430 70.7
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 3.8e-83 313.5 439 68.6
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 3.8e-83 313.5 434 68.7
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 4.9e-83 313.2 439 68.3
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 4.9e-83 313.2 439 68.3
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 8.4e-83 312.4 432 69.9
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 1.9e-82 311.2 422 69.0
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 7.1e-82 309.3 432 69.4
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 3.5e-81 307.0 431 67.5
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 4.6e-81 306.6 422 68.7
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 4.6e-81 306.6 422 69.2
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 2.3e-80 304.3 429 70.4
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 6.6e-80 302.8 421 68.9
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 1.1e-79 302.0 424 68.2
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 9.6e-79 298.9 415 70.8
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 4.8e-78 296.6 426 70.9
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 1.8e-77 294.7 426 69.2
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 4.0e-77 293.5 427 65.6
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.0e-76 291.2 228 66.2
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 7.6e-76 289.3 425 69.9
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 3.5e-73 280.4 428 68.5
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 1.8e-72 278.1 436 51.4
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 4.8e-70 270.0 507 49.9
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 3.4e-68 263.8 377 66.8
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 1.8e-64 251.5 421 64.8
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 1.8e-64 251.5 421 63.4
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 1.4e-61 241.9 424 59.9
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 4.6e-57 226.9 197 60.9
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 3.0e-56 224.2 245 51.0
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 1.3e-43 182.2 409 58.4
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 3.5e-36 157.5 269 79.2
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 1.8e-32 145.2 132 53.0
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 5.2e-32 143.7 228 44.3
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.3e-30 139.0 78 82.1
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 9.1e-29 132.9 78 78.2
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.0e-27 129.4 78 74.4
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 3.8e-27 127.5 78 78.2
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 9.4e-26 122.9 421 51.8
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 6.1e-25 120.2 78 71.8
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 2.3e-24 118.2 68 79.4
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 1.5e-23 115.5 78 67.9
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.6e-23 114.8 67 76.1
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 8.3e-22 109.8 63 77.8
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 1.1e-18 99.4 401 53.4
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 1.4e-13 82.4 48 70.8
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 5.2e-08 63.9 179 27.9


User provided reference genes

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